Pseudomonas fluorescens MEP34, RU10_RS12180

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain MEP34 contig_16, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GAAGTGATGCTGAAGGTGCTGTACGGCCTGAAGAACTTCGAGGGGAAATCGAAGTTCAAAACCTGGCTTTACAGCATCACTTACAACGAATGCATCACGC AGTATCGGAAGGAACGGCGTAAGCGTCGCTTGATGGACGCTCTCAGTCTGGACCCTCTTGAAGAAGCGTCTGAAGAAAAGGCGCCGAAGCCGGAGGAGAA GGGTGGGCTTGATCGCTGGCTGGTGTATGTGAATCCGATTGACCGCGAAATTCTGGTGCTACGATTTGTCGCAGAGCTGGAGTTTCAGGAGATCGCAGAC ATCATGCACATGGGTTTGAGTGCGACAAAAATGCGTTACAAACGCGCTCTAGATAAATTGCGTGAGAAATTTGCAGGCATTGCTGAAACTTAGTTCAGCG CAAATATCTCTTACGTGTAGGCAAGTTCTGATAGACTTGCCGCCGAGTTGTCCCCCGGTTTGCGGGACTGCTTCACAATCACCAGATGGGGATTTAACGG
DNA Sequence for Gene
>RU10_RS12180
ATGAAACTGAAAAACACCTTGGGCTTGGCCATTGGTTCTCTGATTGCCGCCACTTCGTTCGGCGCTCTGGCACAAGGCCAAGGCGCAGTTGAAATCGAAG GCTTCGCTAAGAAAGAACAATTCGACAGCGCTCGTAACTTCAAGAACAACGGCAACCTGTTCGGCGGTTCGATCGGTTACTTCCTGACCGACGACGTTGA ACTGCGTCTGGGCTACGACGAAGTGCACAACGTACGTGCCGACGATGGCAAGAACGTCAAAGGCGCTAACACCGCTCTGGACGCTCTGTACCACTTCAAC AACCCAGGCGACATGATTCGTCCATACGTTTCGGCCGGTTTCTCTGACCAGAGCATCGACCAGAACGGTTCGAACGGTCGTAACCGTTCCACCTTCGCCA ACGTTGGCGGCGGTGCCAAGCTGTACTTCACCGAGAACTTCTACGCCCGTGCCGGCGTTGAAGCTCAGTACAACATCGACCAGGGCGACACCGAGTGGGC TCCTAGCGTCGGTATCGGTGTGAACTTCGGTGGCGGCTCCAAACCAGCTGCTGCTCCAGTTCCAGCACCTGCTGAAGTCTGCTCCGACAGCGACAACGAT GGCGTTTGCGACAACGTTGACAAGTGCCCGGACACCCCAGCCAACGTAACCGTTGACGCTGATGGCTGCCCAGCAGTTGCTGAAGTTGTTCGTGTTGAGC TGGACGTGAAATTCGACTTCGACAAGTCGGTAGTCAAGCCTAACAGCTACGGCGACATCAAAAACCTGGCTGACTTCATGAAGCAGTACCCATCCACCAC CACTACTGTTGAAGGTCACACTGACTCCGTCGGTCCTGACGCTTACAACCAGAAACTGTCCGAGCGTCGTGCAAACGCCGTTAAGCAGGTTCTGACCAAC CAGTACGGTGTTGAATCGTCCCGCGTTCAGTCTGTTGGCTACGGCGAATCCCGCCCAGTTGCTGACAACAAAACTGACGCTGGCCGCGCTGTAAACCGTC GCGTAGAAGCGCAGGTTGAAGCTCAAGCTAAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTAGCTGCCGCTGATGGAAAAGCCCGGCTCAGGCCGGGCTTTTCTTTGTCCGCGATTTGGTTACGGAGCTTAAAGCGCTTGCACGCCGTACGCCGTGCAG GAGCTGCCGAAGGCTGCGATCTTTTGCTCTTGGGCAACAGCCGCCACTGCACCAATCACCAGAATCGCCGGGCTCTTCAACTCGAACGCTGAGGCATCCT CAGCCATCGCGCTCAGATCACTGCGACACTCCCGCTGATGCGCCAACGAGGCATTTTCGATCATTGCCACCGGCGTATCCGCCGCCATCCCTCCCGCCAA CAGCTGGTCGCGAATCTCGCCCAGTTTGGCAACGCCCATGTAAACCACCAACGTCGTCCCGCCTTGCGCCAACGCCTGCCAGTTCAACTGGCTGTCATCC TGCGTGTGCGCAGTTACCAACGTCACCCCGCGTGCCACGCCACGCAACGTCAGCGGAATATCGCACTGCGTCGCCCCGGCCAGCCCAGCGGTGATGCCGT
Amino Acid Sequence
>porin
MKLKNTLGLAIGSLIAATSFGALAQGQGAVEIEGFAKKEQFDSARNFKNNGNLFGGSIGYFLTDDVELRLGYDEVHNVRADDGKNVKGANTALDALYHFN NPGDMIRPYVSAGFSDQSIDQNGSNGRNRSTFANVGGGAKLYFTENFYARAGVEAQYNIDQGDTEWAPSVGIGVNFGGGSKPAAAPVPAPAEVCSDSDND GVCDNVDKCPDTPANVTVDADGCPAVAEVVRVELDVKFDFDKSVVKPNSYGDIKNLADFMKQYPSTTTTVEGHTDSVGPDAYNQKLSERRANAVKQVLTN QYGVESSRVQSVGYGESRPVADNKTDAGRAVNRRVEAQVEAQAK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site