Pseudomonas fluorescens MEP34, RU10_RS11805
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain MEP34 contig_16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAACACCGTCAGCGCCGCACCGGACAGGCGCCCGCGATTGGCCTTGATGAGGTCGAACTGGCCCGAGCCATCCTTGTCGGCTTCGTGGTCGTGGCTGCCG AAACTCAGCGGCACGGTGATGTGGCTGTCGAACGACAGCAGGCGATCCTGCAATTCGGTCGCCTGTTTCATCACCTTCACCGGGTAGCCGGGGTTGTTCC AGTAATCCCAGGCCAGAAATCCTGCGCCGGCGCTGATCGCCAGGGCCAGTGGCAGGCCGATGAATAGAGCCTTTTTCCAACGCGGTTTTGTCATTGCCAT CTCATTCAGGTTCGCCGTCGAGGTACAGGCGCAGGGGCCTTTGCTATCTGGGAAGAACGAGTGGCCGGGTGGCTAATTTAGGCGGCGTTACAAATGCCCG GTGGTGCCGTTGCGATGTTTTGCCGGCAGCGTAAATTTCCCCGTCGAGCAAACGTTCTAGCTTGGATAAAGCCTGCTTCATGGCTGACACAGGTAGGGCA
|
|
| DNA Sequence for Gene |
>RU10_RS11805
ATGACGATCTCTCGACGCTGGTTCATGGCGGGCATGGCACTCACGGGCGCCGCGCTGCCTGCCGCTTTTTATGCACATCGTGAACTGACTCGCGAGGAGT TTCCGATCACCCCGGGCGAGGCCACGGTCGATCTGGCGGACACCGCCGGGCAACAACTGGCGGACAATCTGCGCGGGGTCTGGGACATTCGCTTTACCGG TGCGGCGGCTGGGCTCGATGGCTTGCCGGCGCAAGGCCTGGAGCTGTTTCTCGACATCGCTCACCGTGGCCGTGGGCTGCGCGGTTATCTCGACACCGGG ACCAATCTGCGTGCCGAGGGGCCTGCGCGTTATCAAGTGATCGGTGATCTGGCGCCGGGCAACGGCGCCGAGATGTATTGGCGCCTGCTGCGCACCGATG CGCCGTTAGCGCCACCGGTGTATGAGTTCAAAGTCAAACTGGATGAAGTCTGGGCGGCATTCGGCAATGCCGGCAGCGCCACGTTCACCGGGCAGGTACT GCGTCTGGATCGGCCGCTGGCGTTGCCCGAGCTGGACAATCAGTTCATCGCCATCAAGCGACGCTTTCCCGAAGCCCGCGAACGCACCGGGCTCAGCCCG CAACTGTTGGCCTGGCTGGTGGCGCCCGAACATCGGTTGTTCCATCAGCTCTGGCACGCCACCCGCGACAAGTGGCACAAGCTCTCGGAGAAAAAACGCG AAGCGCTGCGCGGTATCGGCTGGCAGCCCGGGCCGCGCGACAGGGAGCGCGATGCCCGTGGCCCACGCAAGGATCGCAATGGCTCCGGCGTGGACTTTTT CTTCATGCATCGGCACATGCTCGGCATCGCCCGGTCGATGCAGGATCTGCCGTCGTGGCCAGCGTTCCCGCAGCCGCAGCCAGAGCTGGAACGCGACCGA CAGGGCTTCGCCCGCTATTTCGACAATCACGACGGCAACTCACTGCCGCCGACCTGGCTGGCCGAGGGCGATGACGAATACACCAAATGGGTCAGCGACA TCAAAGCGGCGGAGACTTTCCAGAGCAATTTTCTGGTCTGGGAATCGCAGTACCGTGATCCGCGCTACTTGTCGAAGTTGACCCTTGGCCAGTTCGGTTC CGAAGTTGAACTGGGCCTGCACGACTGGCTGCACATGCGCTGGGCTTCGGTGGCGCGTGATCCGTCCAACGACATTCCGGTGCCGATGGCACGCGATCAG GCGGATTTCGCCGCGCGCTGGTATGCACCGGAAAACGACTTTCTCGGCGACCCGTTTTCCTCCCATGTGAACCCGGTGTTCTGGCGTTTCCACGGCTGGA TCGATGATCGCCTGGAAGACTGGTTCCGCGCCCACGAGCGCTTTCATCCGGGTGAGGTGACCCGTCTGCAGGTCAATGGCGTGCCGTGGTTTGCACCGGG GCGCTGGGTGGAAGTCGCCGACCCCTGGCTCGGCCCCGACACCCACGGTTGCAGCACCGTGCCCGGCCTGCAAGTCGGGCGCTCGGTGGAGATGGACCCG GAAACCATGAAACTGGCGCTGCGCATCACCTTCGGCGACGAAGACAACATGACCGACCTGTTCCGCAAAGTCCCCCGGCGACCGTGGTATGCACGGCATC TGAAGGTCAAGGGCCGACAGCTCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATCGGTTCAACACATACTCTGAATTGATCGCAATCCCTTGTAGGAGTGAGCCTGCTCGCGATGACGTCGTGTCAGTCACCCGTTATGCCGGATGACCAAC CGTGATCGCGAGCAGGCTCACTCCTACAGGGGGTATTTATCGTGGCGAAGATTTTGGCCTGACCGAATGACCCCTGTGGGAGCTTGCTCGCGAAGGCTTT TTTTGGGGGGGGTCTTTTTGAGTGAGTACATATCCATTGCTGCGGTAACGGCTGGTTAGGGTTCCGCCCTTACGGCGGGTCACTTTTTCCAGACGCCGAA AAAGTAACCAAAAAGGCTTGCTCCTGCGTTCGGCCCTCGCAGGCTCGGGTTCCTTCGCTGCGGGATCGATCCGGGCGCAGCGGCTCCGGTTTGCTTCGCT GCACCTACACTCGCTGTGTACGACTGCGTCGTACGGTCGCTGCGCTCCCACGCCCGGATCAATCCCTCCGCTCAGCCTTCCGACGTCGCTGGAGGATCAA
|
|
| Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MTISRRWFMAGMALTGAALPAAFYAHRELTREEFPITPGEATVDLADTAGQQLADNLRGVWDIRFTGAAAGLDGLPAQGLELFLDIAHRGRGLRGYLDTG TNLRAEGPARYQVIGDLAPGNGAEMYWRLLRTDAPLAPPVYEFKVKLDEVWAAFGNAGSATFTGQVLRLDRPLALPELDNQFIAIKRRFPEARERTGLSP QLLAWLVAPEHRLFHQLWHATRDKWHKLSEKKREALRGIGWQPGPRDRERDARGPRKDRNGSGVDFFFMHRHMLGIARSMQDLPSWPAFPQPQPELERDR QGFARYFDNHDGNSLPPTWLAEGDDEYTKWVSDIKAAETFQSNFLVWESQYRDPRYLSKLTLGQFGSEVELGLHDWLHMRWASVARDPSNDIPVPMARDQ ADFAARWYAPENDFLGDPFSSHVNPVFWRFHGWIDDRLEDWFRAHERFHPGEVTRLQVNGVPWFAPGRWVEVADPWLGPDTHGCSTVPGLQVGRSVEMDP ETMKLALRITFGDEDNMTDLFRKVPRRPWYARHLKVKGRQL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|