Pseudomonas fluorescens MEP34, RU10_RS10020
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain MEP34 contig_12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTCGGTTAAAACAGCACTTCCCAAAATGCCTGCAAGCGCTTTACATTGGTGCTTGCAGCGCGTTGAAGGGTCTGGTCAAAAAATCAGCGCTTCCCTAA TCGCTGGTGATTTTTTAAACTGCTCAGTCCGCTCGCCCAACCGGGCAGCGCGCATATTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAA GACTGCCTAGAACACGTGGAAAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACCGGCGGCAAAGAGCCATTGGTGCAGT GGGAAAACGACAAGCCGACCGTTGTCGCGCTGCGTGAAATTGCTGAAGGCCTGATGAGCTACGAGTTCATCGCCGAGCAGGAAATCGTCCAGGATGAACC GCTGTTCGCAGCGTTCGAGGACGAGTCGAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGGTCACAGCCTTCGGCAGGAATCATC
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| DNA Sequence for Gene |
>RU10_RS10020
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGCAACGACCAGGTCAACCTGGTTCGCCGAGCGTATTTCTACGCCGAACAAGCCC ATGACGGTCAACGCCGTCGCAGCGGCGAGGCGTACGTCACGCATCCTCTTGCCGTGGCGAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCCGCCATGCTGCATGACGTGATCGAAGACACCGGGATCGCCAAGGAAGCGCTGCAGGCGCAGTTCGGTGAAACCGTGGCGGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAAGCCGAAGCTCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCGCGCGACATCCGGGTGATCC TGGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGCGAAAAACGTCGGCGCATCGCCAAGGAAACCCTCGAGATCTACGC ACCCATCGCCAACCGGCTGGGCATGCACGCGATCCGCATCGAGTTCGAAGACCTCGGCTTCAAGGCCATGCACCCGATGCGTTCCGCGCGGATCTACCAG GCGGTCAAACGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAATCCCTTGGCCACTGCCTCGCCATCGACGGCATCCAGGGCGAAGTCA GCGGTCGCCAGAAGCACCTCTACGGCATCTACAAGAAAATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTCTACGCGTTCCGGATCATCGT CGACAAGGTCGATACCTGCTACCGCGTGCTGGGTGCTGTGCATAATTTGTACAAGCCGTTGCCGGGGCGTTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTATCAGTCGCTGCACACTACGCTGTTCGGCATGCACGGCGTACCGATCGAGATCCAGATCCGTACCCGCGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCATTGGCTGTACAAGTCCAGCGGTGACGAACAGCCCAAAGGCACCCATGCCCGCGCCCGCCAGTGGGTCAAAGGCGTGCTGGAAATGCA GCAACGTGCTGGCAACTCGCTGGAATTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAG CTGCCGAAAGGCTCGACAGCGGTCGACTTCGCCTACGCAGTGCACACCGACGTCGGCAACAGCTGCATCGCCTGCCGGATCAACCGTCGCCTCGCACCGC TGTCCGAACCGCTGCAAAGCGGTTCCACGGTCGAGATCGTCAGCGCCCCCGGCGCACGGCCGAACCCGGCGTGGCTCAACTTCGTGGTCACCGGCAAGGC GCGTACGCACATCCGCCATGCGCTGAAGCTGCAACGCCGCTCCGAGTCCATCAGCCTCGGCGAGCGCCTGCTGAATAAGGTGCTCAACGGTTTCGACAGC TCCCTGGAAAAAATTCCGGCCGAGCGCGTGAAGGCGATGCTCACCGAGTACCGCCTCGAGCTGATCGAAGACCTGCTCGAAGACATTGGCCTGGGCAACC GCATGGCCTACGTGGTCGCCCGCCGGCTGTTGGGCGAAGGCGAACAGTTGCCAAGTCCGGAAGGTCCGCTGGCGATTCGCGGTACCGAAGGTCTCGTGCT CAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATCGTCGGCCACCTGTCGGCGGGCAAAGGCATGGTCGTGCACCTGGACAACTGCCGCAAC ATCAGCGAAATACGCCACAACCCGGAAAAATGCATCCAGCTCTCGTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTGCGCGTCGAACTGGAAC ACCAGCGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCGGCCGACGGCAATATCGAGAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT CGTGCAGTTGGTGGTCAGCGTCCACGACCGTGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCTTGACCGGGGTGATCCGCATCACCCGCATGCGC GCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTGCCTATTACAAGGAGTCCTACATGACCAAAACCGTCATCACCAGCGACAAGGCCCCGGCCGCCATCGGTACTTACTCCCAGGCGATCAAGGCAGGCA ATACCGTTTACATGTCGGGCCAGATCCCCCTTGACCCGAAAACCATGGAACTGGTCGAAGGCTTCGAAGCCCAGACCGTCCAGGTCTTCGAGAACCTCAA GGCCGTAGCCGAAGCCGCCGGCGGTTCGTTCAAGGACATCGTCAAACTGAACATTTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTACTTCGACCAGCCCTACCCTGCCCGCGCCGCCATCGGCGTGGCCGCCCTGCCGAAGGGTGCGCAGGTTGAAATGGATGCCATTCTGGTCATCG AGTGATGCGCACGGCGCGGCCTTCAACGCCGCGCCGACTGCCGCAAGAAAAGGTTTTGAAAGGATTCCACCATGCGCAAAGCGCTAGCTCTCTCGCTGCT
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSTYLGNDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLGHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS SLEKIPAERVKAMLTEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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