Pseudomonas fluorescens MEP34, RU10_RS09835

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain MEP34 contig_12, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACGCATCAACGTCACCTTCAAACCCGCCACCGGCGGTGCTCAGGAAGAGATTGAACTGCCGCTGAAGCTGCTGGCAATCGGTGACTACACCCACCGCAAG GACGATCGCAAAATCGAAGATCGCAAGCCGATCAGCATCGACAAGGTGACCTTCGACGAAGTGCTGGCCAAGCAAGAGCTGGGTCTGACGCTGAGCGTGC CGAACCGTCTGCAGGAAGATGGCGAGGCTGAAGAGCTGGCCGTGCAATTGCGCGTCAATTCGATGAAGGACTTCAACCCGGCCAGCCTGGTCGAGCAAGT GCCTGAGCTGAAAAAACTGATGGAACTGCGCGATGCGCTGGTGGCCCTCAAAGGCCCGCTGGGTAACGCACCTGCGTTCCGTAAAGCGATCGAAGGCGTG CTCGCCGACGACGAATCCCGCGGTCGCGTACTCGGTGAGCTGGGCCTGAACGCCGCAGCCCCGGACGCCTGAGACTCCAGTAGCCAAGGAAGCCAACACA
DNA Sequence for Gene
>RU10_RS09835
ATGAGCACTAGCGCAGCACAAGAGAAGAGCGCCGCCAGCGGCGAATACAGCATTCTCGACAGCATCATCGCCGAAACCCGTCTGACCCCGGACGACGAAG CCTACGACATCGCCAAGCGTGGCGTGTCGGCGTTCATCGAAGAGCTGCTCAAGCCGCAGAACAACGGTGAGCCGGTCAAGAAAGCCATGGTTGACCGCAT GATCGCCGAGATCGATGCCAAGCTCAGCCGTCAGATGGACGAGATCCTCCACCACCCGGATTTCCAGGCGCTGGAATCGTCGTGGCGTGGTCTGCAGTTG CTGGTCGACCGCACCAACTTCCGCGAAAACATCAAGATCGAAATCCTCAACGTCTCCAAAGAAGACCTGCTGGACGATTTCGAAGACTCGCCGGAAGTCA TGCAGTCGGGCCTGTACAAGCACATCTACACCGCTGAATACGGCCAGTTCGGTGGTCAGCCTGTGGGCGCGATCATCGCTAACTACTACATGTCGCCAAG CTCGCCAGACGTGAAGCTGATGCAGTACGTGGCCAGCGTTTCGTGCATGTCCCACGCGCCGTTCATCGCTGCGGCCGGTCCGAAGTTCTTCGGTCTGGAA AGCTTCACCGGCCTGCCGGATCTGAAAGATCTGAAAGACCACTTCGAAGGCCCGCAATTCGCCAAATGGCAGAGCTTCCGTACTTCGGAAGACTCCCGTT ATGTTGGCCTGACCGTGCCGCGTTTCCTGCTGCGTAACCCGTACGATCCGGAAGAAAACCCGGTCAAATCGTTCGTGTACAAGGAAACCGTTGCCAACAG CCACGAGCACTACCTGTGGGGCAACACCGCTTACGCGTTCGGCACCAAGCTGACCGACAGCTTCGCCAAATTCCGCTGGTGCCCGAACATCATCGGCCCG CAGAGCGGTGGCGCGGTTGAAGACCTGCCGTTGCACCACTTCGAAAGCATGGGCGAAATCGAAACCAAGATCCCTACCGAAGTATTGGTTTCCGACCGTC GTGAATACGAACTGGCCGAGGAAGGCTTCATCTCCCTGACCATGCGCAAAGGCTCCGACAACGCGGCGTTCTTCTCCGCAAGCTCGGTGCAGAAGCCGAA GTTCTTCGGCATCAGCGCAGAAGGCAAGGCGGCAGAGCTGAACTACAAGCTCGGCACCCAACTGCCGTACATGATGATCGTCAACCGTCTGGCTCACTAC TTGAAAGTGCTGCAGCGCGAGCAACTCGGTTCGTGGAAAGAGCGTACCGACCTCGAGCTGGAACTGAACAAGTGGATCCGTCAGTACGTTGCCGACCAGG AAAACCCGAGCGCCGAAGTGCGTGGCCGTCGTCCGCTGCGCGCTGCGCAAGTGATCGTCAGCGACGTTGAAGGCGAGCCGGGCTGGTACCGCGTGAGCTT GAACGTGCGTCCGCACTTCAAGTACATGGGGGCCGATTTCACCCTGTCGCTGGTTGGCAAGCTGGACAAAGAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GAGCGACTCATGGACGGATACGGCAGCCTGTTCGAACGCCTCAACGGCGACGCACAACTACGCAAGGGCAACAGCCTTGAGGCTTGTGCCATGGCGTCAG TGGCTGCCCATCTGGCCAAAATGCTCAGCACCCGGGCCGGCAGCGTGCAAACGCTGGCCGACTACGGGTTGCCCGATCTCAATGACATGCGTCTGAGCCT GCACGACTCCCTGAGTCAGGCTCGTCTGGCTATCGAAAACTTCATCGAAGCCTACGAGCCGCGCCTGAGCAATGTGCGTGTCATTTCCCTGCCGCGTGAC CACGATCAGCTTCGCCTCGCCTTCAGCATCGAAGGCCTGCTGGAAGTTGAAGGTTTCAAGCGTCAGGTCAGTTTTTCCGCGCGCCTGGATGGCAGCGGTC AAGTCAAGGTCACTTAAGGAGATCCCCGATGTCTGGCAAACCCGCAGCACGCGTATCCGACCCCACCGCTTGCCCGCTCCCCGGCCACGGCACCAACCCG
Amino Acid Sequence
>type VI secretion protein
MSTSAAQEKSAASGEYSILDSIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNNGEPVKKAMVDRMIAEIDAKLSRQMDEILHHPDFQALESSWRGLQL LVDRTNFRENIKIEILNVSKEDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAIIANYYMSPSSPDVKLMQYVASVSCMSHAPFIAAAGPKFFGLE SFTGLPDLKDLKDHFEGPQFAKWQSFRTSEDSRYVGLTVPRFLLRNPYDPEENPVKSFVYKETVANSHEHYLWGNTAYAFGTKLTDSFAKFRWCPNIIGP QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGISAEGKAAELNYKLGTQLPYMMIVNRLAHY LKVLQREQLGSWKERTDLELELNKWIRQYVADQENPSAEVRGRRPLRAAQVIVSDVEGEPGWYRVSLNVRPHFKYMGADFTLSLVGKLDKE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site