Pseudomonas fluorescens MEP34, RU10_RS09825

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain MEP34 contig_12, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCAATGCGAGGGCGTATTTGTTGCAGAATGAAGTTTCAATAAGCGAGATGCCATCATTGTGATGGCACTTTTTGAACTGCTCGTTGTCGCGAACGATTGG TTGAAATATGCCGGTAGTCATTCGGAAGTGTCCTACTTCTATTTTTTTTTGAATTTGCCATGCTGCACGCCGCTCGAGGATGCGAGCGTCCGGTAAACTC GCCCGGCCGGGGCGGGAGGCTCCGGGTCAATGGTTTGGCGGGAGCAGGGAATATGCGCTGATTAATAAGCGGCCTCAGGGAAACCCCTGTGACATATAGG GCGATCTCCTACAGAGCCCACTGAACACTTCGTCTTGTTGTTTAATCAGATGCTTGCTAGTGGCCATCATAGTGATTACGATGCGCCCACTTGAAAGAGC ACATCTCAATTGGATGAGTCGCGTCACTGCTCTTCGATACTGTCCCGCGTTGCTGAACTCCATTCGCGCGTCTGACTGTAATCCTTACTAAAGGCCATGG
DNA Sequence for Gene
>RU10_RS09825
ATGTCCTACTCAAGCAAACTTTCCGCCCATTACCTCGAACTCGCAAAAGTCTCTGTTTCCAAAGAGAATTTCGCGGGCGAAGACGTTCGTTTCTCGAGCG AATTCGAGGCGCTGGAAAGTGAGCTGGCCAAGGCTTCGTCGATGCACGAAAGCGGGCAGATCGACTGGCTGAAAATCCGCGAAAACAGCGAAAACCTGCT GCGTACCCAATCCAAGGATCTGCGTGTCGGCGCCTGGCTGACGTGGTCGCTGTATCAGCGCGAATCCTTTCCGGGGCTGCTCGCCGGCCTCGGTCTGCTG CACCATCTGTCGGAAAATCACTGGGCCGACGTCCACCCGCTCAAACCCCGCACCCGCGCCGCCGCGATCGGCTGGCTGGTGCCGCGTCTCGAGCAGGTCA TCACCGAAAACATTGCGATCAAAGAGCAGTTGCCGATGTTCCGGCAGCTCTCTGAGCACCTGGCCGGCCTCGAGGCTGCCTGCACCGAACATCTGGGCGA TGACGCGCCGCTGCTGCTGCCGATCTCCCGTCGCCTGAAAACCATGATCCAGCGCGCAGCCGACAACCAGCCGGCCCCCGGCGTGGTGGGTGCGGCGGTG GCGCAGGTCAAGCAGGCCGCGAGTCAATTGCTCGCCCCCGGTGCGCCGATCGACAACGAACGCGATGCGCACAAAGCCCTGCGCGCGCAGCAGGAAAGCG CCCGTCCGTTGTGCGCCTGGTGGCTCAAGCAGAAGGCCACGGACCTGCGCGCCCTGCGCCTGAACCGTACGCTGCTGTGGATGACCGTTGATGCGGTGCC CGAGCGCAACGCCGAGCAGATCACCGTACTGCGCGGCCTGCCGCTGGAAAAGCTCAAGCTCTATCAGGACCGCTTCGATCAGGGTAAATACGCCGACCTG CTGGTGGAACTGGAGGCGAGCCTGGCGAAGGCGCCGTTCTGGTTCGATGGCCAGAGGATGGTCTGGGAATGTCTGCAGAACCTCAACGCCGAGCTGGCCA TGCGCGAAGTGGAAATCCACTTCGCGCTTTTGATTCAGCGCCTGCCGGGCATCATCGAGTTGCGCTTCCATGACGGCGCGCCGTTTGCCGATCCGTCCAC CCGGGCGTGGATCGCCGCCAACGTCATGCCGCACCTGCAAAGCGCCAGCGCACCGCGCAAGGTCGAAAGCGAAAACGTCGAAACCCAGCCGGCCTGGGAA AAAGCCCTCGAGGACGTCCAGCCGATCCTGCGCAAGGAAGGTTTGAAACCCGCCGTGCAGATTCTCAAGCAGGGTCTGCAATCAGCCTTCGGCGGGCGCG AACGCTTTTTCTGGCAGTTCGCCCTCGCGCGGCTGTGCTTCCTGGCCAAGAAATACGAACTGGCCAAGAACCAGCTCGAAACCCTCGATCAGACATTACT GGACTCAGGCCTGCACGCCTGGGAGCCGGAGCTTGCATTGCAAGTGCTGCACCTGCTGCACAGTTGCTGCGAGTTGTTGCCGCAGAACCATGCCGTACGT GAACGCAAGGAAGAGATTTATCGCAGGCTGTGCCACCTCGACCTCGAAGTGGTACTCGAATAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCCCAGGGCCACAACCGCAAGGAGAAAAGCCATGGCCAAAGAAGGCTCGGTAGCCCCCAAGGAACGCATCAACGTCACCTTCAAACCCGCCACCGGCGG TGCTCAGGAAGAGATTGAACTGCCGCTGAAGCTGCTGGCAATCGGTGACTACACCCACCGCAAGGACGATCGCAAAATCGAAGATCGCAAGCCGATCAGC ATCGACAAGGTGACCTTCGACGAAGTGCTGGCCAAGCAAGAGCTGGGTCTGACGCTGAGCGTGCCGAACCGTCTGCAGGAAGATGGCGAGGCTGAAGAGC TGGCCGTGCAATTGCGCGTCAATTCGATGAAGGACTTCAACCCGGCCAGCCTGGTCGAGCAAGTGCCTGAGCTGAAAAAACTGATGGAACTGCGCGATGC GCTGGTGGCCCTCAAAGGCCCGCTGGGTAACGCACCTGCGTTCCGTAAAGCGATCGAAGGCGTGCTCGCCGACGACGAATCCCGCGGTCGCGTACTCGGT
Amino Acid Sequence
>type VI secretion protein ImpA
MSYSSKLSAHYLELAKVSVSKENFAGEDVRFSSEFEALESELAKASSMHESGQIDWLKIRENSENLLRTQSKDLRVGAWLTWSLYQRESFPGLLAGLGLL HHLSENHWADVHPLKPRTRAAAIGWLVPRLEQVITENIAIKEQLPMFRQLSEHLAGLEAACTEHLGDDAPLLLPISRRLKTMIQRAADNQPAPGVVGAAV AQVKQAASQLLAPGAPIDNERDAHKALRAQQESARPLCAWWLKQKATDLRALRLNRTLLWMTVDAVPERNAEQITVLRGLPLEKLKLYQDRFDQGKYADL LVELEASLAKAPFWFDGQRMVWECLQNLNAELAMREVEIHFALLIQRLPGIIELRFHDGAPFADPSTRAWIAANVMPHLQSASAPRKVESENVETQPAWE KALEDVQPILRKEGLKPAVQILKQGLQSAFGGRERFFWQFALARLCFLAKKYELAKNQLETLDQTLLDSGLHAWEPELALQVLHLLHSCCELLPQNHAVR ERKEEIYRRLCHLDLEVVLE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site