Pseudomonas fluorescens SF4c, QS95_RS07895

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain SF4c contig_7, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATTCATTTTGTCTGCACGACTTTTTCTAACAATCGGGTTTGCGCTGCTCGCCGGTTGTTCGTTTTTCGGGCCGAAAGTCGATCTCGACAGCCTGACCCTC GACGTCGCCCCCAAGGCCAATGACGACACCCCGATCGCCGTGGATTTCATCGCGGTCAACGATCCGGATCTGCTCAAGCAATTGTCGGGCATCAGTGCCC GCCAGTGGTTCGCCGAGCGCGAGCAGTACCAGCGCGACTATCGTCAGCTGATGAGCGTGTGGGGACTGGAGCTGGTGCCGGGGCAATTCATCGACCGCCA GCCGTTCCCTTTGGGGGGCAAGCGGGCGGCTGGACTTTTGGTCTTCGCCAGCTATAACACTCCCGGAGCGCACCGCCTGCGGCTGGACGATCAGAGCGAC GCATGGCTCAAGTTCGACAGTCGCGAGATGAGCCTGGTCAGCAAGGAAAACTGAAACACACCGTCCGCCGCCGGTTCGCGGTGCAGTCGAAGGGAGTCGT
DNA Sequence for Gene
>QS95_RS07895
ATGAGTCTGCTACCTGACGCGGTCTGCTGGCATGAAGGCATGCAATTGCTGCCCCAGCATTTTCAGTTACAGGGCCTGCGGGCCGAGGCCCTTGGAGCGC ATCTGGCTCAGTCGTGCAATCCGTGGTTCTTCGGCGTCAGCCACATGGAGTTCGACCCGTCGGCGATGAGCGCCGGGGTGGTGCGGGTGCTGTCGTTACA GGGGACGATGCCGGACGGTCTGCCGGTCAATCTGCAAGTCGGCGTCGACCCGACGCTGGAGCTGGACGTCGCTGCCGCGATCGACGCCACGGAGGATGCG ACGGTGACGGTTTATCTGGCGATCAGTCCGCTGTGGCGCGCCGGCCAGTTGTTGCCGCTCAAGGGACGTTTGCAATCGGTGGTCGGCGAGGCATTGCCGG ATCTCACCAGCGGTGAATTTCCTGAATCGATCACGGTGTGGCGTCCCAATCCACGGCTGTGCACGCAACTGAACAAGGCCGATTCGATCTGCCTGCCGCT GCTGAAAATCCGCAAGGAGGGCGGCGGTTTCCTGCCATTGCCGTATACGCCGCCGACACCGGTCCTGTTGCCGGAATCCCCATTGGGTCGGCGGGTGGCC GGGCTCTGCGCGCGGGCGCGGGAGAAGTGCCTGTTTCTCGGCGGGCGATTGCGCCAGGCGCAACAGGCCGGCAATCAGGATGACGCGCTGGAAATCCGTC GGCAGATGACGGCGTTGTGGGCGCGGTTGCCGGAAGTGGAAGGGGCGCTGATCAGCCGTGTCGCTCATCCGCAAAGCATTTATGTGCAACTGCTGGGACT CGCCGGTGCGTGGTCGGCGCTGGACCCGCTGGCGGGCGTGCCGGCTTTTGCTCCACTGGATTTCCTCGAATTGCAACGCGGTTACGAACCGCTGCTCGAC TGGCTGGAAAATACCCTGGAACTGATCCGTGCCGGTTACCGCAGCATCGCATTCGAGCGCGGCGAGCAGAGTTTTTCCATTCAGTTGCCGGACGAGCAAC CGAGCCAGCGTCTGGTCATCGGCCTGCGCATGCCCAACGGCGCCAGCGAGCAGGCGGCCGACGAATGGCTGCGCGGCGCGATCATCGCCTCGGCTCCGCA CATTACCTTGCTCAGCCGTCAACGCATGAGCGGTCTGACGCATCAGGCCATGAGCCGCAGCGAGCAGGTGGCCTACAGCGTCGGCGACGACACCCGGTTG TTCGTGGTGACCGCCGAAGGTAGCTGGTTCGATGCGCAACTGCCGCTGATGATCGCCGCGCCGGCCACCCGGCTGACCAGCAGTCCGTGGCAAGTAGTGT TGTTTGTCGCCCAGAACAGTGAACGTGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCACACAAGGAACGTCGTATGTCGCAAGGAAGTGCCGCAAGCCTCGGGTTGCAGGACGCTCCGCTGAGCAGTGCGTTCCGCCACACCTGGCAGCAGTGGT CGCAGGACTGGAGCCAGTTGCCCAAGGACAGCGAGGACGAAGCGGCGCTGGTCGAAACCGTGGTCGAACTCTCGACCCAGGCTTCGCAACGGTTGTGGCG CACCGCGTTTGCCCGGGTCGGCGATTCGGCGACCGAGCAGGTCAAGGCGTTGGTGTACGCGTTTGTCGCGCTGGTCGATGAAACCCTGCTGTTCAGCCCG TGGCCGGGCCAGAGTGCCTGGCAGGAAAAGCCCCTGGAGTCGCGACTGTATTCCAGCCGTCAGGCCGGCGAACAAGTGCCGGCGGCGATCCAGACCCTGC TCGATGAACAGCAGCCCACCACCCGCGATCTGGCCAACGTGTATTTGCAGTGTCTGATCCTCGGTTTTCACGGACGCCTGCGCGGTGAGCAGGGCCAGGT
Amino Acid Sequence
>type VI secretion protein
MSLLPDAVCWHEGMQLLPQHFQLQGLRAEALGAHLAQSCNPWFFGVSHMEFDPSAMSAGVVRVLSLQGTMPDGLPVNLQVGVDPTLELDVAAAIDATEDA TVTVYLAISPLWRAGQLLPLKGRLQSVVGEALPDLTSGEFPESITVWRPNPRLCTQLNKADSICLPLLKIRKEGGGFLPLPYTPPTPVLLPESPLGRRVA GLCARAREKCLFLGGRLRQAQQAGNQDDALEIRRQMTALWARLPEVEGALISRVAHPQSIYVQLLGLAGAWSALDPLAGVPAFAPLDFLELQRGYEPLLD WLENTLELIRAGYRSIAFERGEQSFSIQLPDEQPSQRLVIGLRMPNGASEQAADEWLRGAIIASAPHITLLSRQRMSGLTHQAMSRSEQVAYSVGDDTRL FVVTAEGSWFDAQLPLMIAAPATRLTSSPWQVVLFVAQNSERA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site