Pseudomonas fluorescens SF4c, QS95_RS05920
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF4c contig_6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCCAGGATCGGCTGACCGTGGCCGTGGTCGACATCGGCGCCACCATGACCACCCTCAGCGTCCTGCACAATGGCCGGATCATCTACACACGCGAACAGC TGTTCGGCGGTCGGCAGTTGACCGAGGAAATCCAGCGCCGTTATGGCCTGACCCTTGAACAGGCGGGACTTGCCAAGAAGCAGGGCGGCCTGCCGGACGA TTACGTCAGCGAGGTGCTGCAGCCATTTCGTGAGGCGCTGGTGCAGCAGGTGTCACGCTCCCTGCAGTTCTTTTTCGCGTCCGGCCAGTACAACGCCGTC GACCACATTCTGCTGGCGGGCGGCACGGCATCGGTGACGGGGCTCGACCGGCTGATCGAAGAGCGCCTGAACACTCCGACCCAGGTCGCCAACCCGTTTT CCGACATGGCCTTGAGCAGCAAAGTCAACGCCGGGGCTTTGGCGAGCGATGCGCCGGCCCTGATGATTGCCTGCGGGCTCGCGCTCAGGAGTTTTGACTG
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| DNA Sequence for Gene |
>QS95_RS05920
ATGGCGCGGATCAACCTTTTACCCTGGCGCGAGGAGCGACGCGAGGAGCGGCGCAAACGCTTCCTGCTGGTCTTGATCGGTGTGGTGGTCGGTTCGGTGG GGGCGGTGCTCATCGCTGATCAGATCATCAGCGGCGCCATTGCTCGGCAGGTTGCGCGCAATGACTACATCGGCAAGCAGATCTCCGTGGTCGACGAGAG GATCAAGCAGATCAGCGACCTCAAGGCCCATCGCCAGCAACTGGTGGAGCGCATGCGCATCATCCAGGACTTGCAGGGCAACCGGCAGATCAGCGGGCGG ATCTTCGATCAGCTGGCGCGCACCTTGCCTGACGGGGTGTATTTCACCGACGTGAAAATGGTCGGCAAGACCCTGTCGATCAGCGGCGCGGCGGAGTCCA ACAATCGGGTGTCCGACCTGATGCGCAATCTTGATGCTTCGGACTGGTTCGATGCGCCCAACCTCAATGAAGTGAAAGCCACCACTGCCGGACAAGTGGA TCAGACCAACGTCTTTCAGCTGACCGTTCGCCAGACTCGACCCCGGCTCGAGGAGGACGACCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCCGTCCGAGTGGCTGGAAAGCCTGCGCAATGTCGATTTCAACGACCTCGACACCAGCAACATCGGCTCCTGGCCGCCAGTGGTCAAAACCTTGGCCGG CGGGCTGTTGATGGTGCTGGTCCTGGCGCTTGGCTATAACTTTTTCATCAGTGACCTGGAGAGCCAGCTCGAACTCAAACGTGAGGAGGAAATCACCCTC AAGGAGCAGTTCGCGAGCAAGGCGCGCATGGCGGCCAATCTGGAGCTGTACACCCAGCAGATGAAAGAGATGGAAAACTCGTTCGGCGTGCTGTTGCGAC AACTGCCCAGTGACACCGAAGTGCCGGGGTTGCTGGAAGACATCACCCGCACCGGACTGGGCAGTGGCCTTGAGTTCGAAGAGATCAAACTGCTGCCTGA GGTTACCCAGCAGTTCTACATCGAGCTGCCCATCCAGATCACCGTGACCGGGGCCTATCACGACCTCGCGACCTTCGTCAGTGGCGTGGCCGGGCTGCCA
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| Amino Acid Sequence |
>pilus assembly protein PilN
MARINLLPWREERREERRKRFLLVLIGVVVGSVGAVLIADQIISGAIARQVARNDYIGKQISVVDERIKQISDLKAHRQQLVERMRIIQDLQGNRQISGR IFDQLARTLPDGVYFTDVKMVGKTLSISGAAESNNRVSDLMRNLDASDWFDAPNLNEVKATTAGQVDQTNVFQLTVRQTRPRLEEDDQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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