Pseudomonas fluorescens SF4c, QS95_RS04665 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF4c contig_4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACTCGCAAGCCCATCCATTGCTTGCCCGGCGAACGGCCTTGACGCAGTACTTCGAACAACACCATGTACCACCAGCTCACCACGAACAGCAGCAGTGAGC CCAGGCCGATACCGAGTTTTCCGAGCAGCGCCAGCAACATGAGCAGCAAGCCCAGGATCAGCCCGCGCAACCCCAGATCAATGGTGAACGCCACGGCGCG CACCATCAGGCCGGCGGGACGCAGCGGCAGGTCGATGCCTTCCGGCGTTTCGACCTGATGCCGTGTGTCCAGTGGCGTGGCCAGCGGTGCTTTCCTTGGC GGTGCTGTGGTCTCGAGCATGGGCTACCTGATGTTGCCGGATCGGGATGCAAGTGCGTCCGATGCTAGCAGTCTCTCGGGGGGAAACGACATAACTATGT CATACACATCTTTCAACCAAAGGTGACTGAATGATGCGGTGCTGGCCGCGACAGCAGTCGAACGCCTAGACTTTGCCGATCTTCAGTTCAGGAACCGCCC
|
|
| DNA Sequence for Gene |
>QS95_RS04665
|sbcB
GTGACTTCCATTTTCTGGTACGACTACGAAACCACCGGCATCAATCCCCGATGCGACCGCCCGTTGCAGGTGGCCGGGATCCGCACCGACCACGAACTCA ACGAAATCGACGCGCCGGTCAATCTCTACTGCCAGCCCAGCGAAGACATCCTGCCGCACCCGGCGGCGTGCGCAATCACCGGCATCACCCCGAGTCGCCT CGCCGAACAGGGCTTGAGCGAAGCCGACTTCATGACCCGGGTCCACGCCCAGCTCGCGGCTCCCGGTACCTGCGGCGCGGGTTACAACACCTTGCGCTTC GACGACGAGATGACCCGCTACAGCCTGTACCGCAACTTTTTCGATCCCTACGCCCGTGAATGGCAGGGCGGCAACAGTCGCTGGGATCTGATCGATGTGG TGCGCGCCGCCTACGCATTGCGCCCGGACGGGCTGGTCTGGCCGACCGACGACGAAGGCAAGGTGACGCTCAAGCTCGAACGTCTGACCGCCGCCAACAA CATCGACCACGGCAATGCTCACGAAGCGTTGTCGGACGTACGCGCCACCATCGCCCTGGCCCGGTTGATCCGCGAGAAGCAGCCGAAGCTGTATGACTGG CTGTTCCAGCTGCGCAGCAAACAGAAGGTCATGGACCAGATTCGCCTGTTGCAGCCGATGGTGCACATTTCCGGACGCTTCTCCGCTGCGCGCAGTTATG TCGGCGTGGTGCTGCCGCTGGCCTGGCATCCGCGCAACAAGAACGCGCTGATCGTGTGTGATCTGCACCTGGATCCGCAGGGTCTGCTCGACCTGGATGC CGAAACATTGCGTCAGCGCCTGTATACCCGCCGTGACGATCTGGCCGAAGGCGAGTTGCCGGTGCCGCTCAAACTCATCCACATCAACAAGTGCCCGGTG GTGGCGCCGTTGGCGGTGCTGCGTGCTGAAGATCAGCAGCGTCTGGGTCTGGACATGGCGTTGTATCAGGCGCGTGCATTGCGACTAAGTGACGCACAAC AAGTTTGGAAAGATAAAGTCTCGGCGATTTATGCCAGCGAAGATTTCGCCTCGAGTGAAGATCCCGAACAACAGTTGTACGACGGATTTATCGGTGATCG CGATCGTCGTTTATGTGAGCAAGTGAGGGCGACCGATCCTGCTCAATTGGCGCGAGAGCAATGGCCGTTCGATGATGAACGTTTGCCTGAATTGTTGTTT CGATATCGAGCACGTAACTTTCCCGATACGTTGAATTTCGAAGAGCAAGAGCGCTGGAAAATCTTTTGTCGGCAACGCCTGTCCGAGCCGGAGTGGGGGG CGCCTAATACCTTGCAATCTTTTGCCGAGGCCATGGAGCAATGGCGGGTTAGTGCTGCGCCGATGCAGGCCGAGGTGCTGGTTGAATGGCAGAACTATGT CCAGGCATTGCGCAAACGTTTGAATCTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AATCGAACATGTCCGGAGCTTGAATGCCGGGCACAAAAAAACGCCAGCATTCGCTGGCGTTTTTTTGTGTCACAGAAGCGCTCTGCGACAAGGGTTGCGG CTTAGCCCAGCAGGGTAGCCCAGCCTTCAACCACGTCACCGCCCCACTTGGCTTTCCACTCTTTCAGAGTTTTGTGGTTGCCACCTTTGGTTTCGATGAC TTCGCCGTTGTGCGGGTTTTTGTATTGTTTAACTTTGCGAGCACGCTTGGTGCCGGTAGTTTTGGCTGCGCCGCCACGTGGAGCCTTGGTTTTGGACTCT GGATCCAGCAGCGCGATGATGTCGCGCAGGGATTTGGAATATTCGCCCATCAGTGTGCGCAGTTTGCCTTCGAATTCCAGCTCGGCTTGCAGTTTGTCGT CTTGCGACAGGTTCTTCAAACGGGCTTGCAGCTCTTTGATAGCTTCTTCGGTGGCACGATATTCGTTGATCAAGGACATGATTACTACCTTATGTGGGAG
|
|
| Amino Acid Sequence |
>exonuclease I
MTSIFWYDYETTGINPRCDRPLQVAGIRTDHELNEIDAPVNLYCQPSEDILPHPAACAITGITPSRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGKVTLKLERLTAANNIDHGNAHEALSDVRATIALARLIREKQPKLYDW LFQLRSKQKVMDQIRLLQPMVHISGRFSAARSYVGVVLPLAWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDDLAEGELPVPLKLIHINKCPV VAPLAVLRAEDQQRLGLDMALYQARALRLSDAQQVWKDKVSAIYASEDFASSEDPEQQLYDGFIGDRDRRLCEQVRATDPAQLAREQWPFDDERLPELLF RYRARNFPDTLNFEEQERWKIFCRQRLSEPEWGAPNTLQSFAEAMEQWRVSAAPMQAEVLVEWQNYVQALRKRLNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|