Pseudomonas fluorescens SF4c, QS95_RS03480
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF4c contig_3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGGCCGAGAAAACCGCCGTGCAGCGTCTGGGTTACTTTCAGGGGCAGGTGAAAGTCGCCGAGAGCAAACTCGCCGACCTCAACGCCTTTCGTCTGGATT ATTCGCAGCAGTGGATCGTGCGCGGCAGCACCGGCGTGACCGGCCAATGGCTGCTGGGTTTTCAGGGCTTCCTGGCGCAACTCGACACCGCCGTCGATCA GCAGCGCCAGAGCCTGCAATGGCACCAGAACAACCTGGACAAGGCCCGTGACGCCTGGCAACAGGCATTCGCCCGGGTCGAGGGCCTGCGCAAACTTGTA CAACGCTACCGCGACGAAGCCCAGCGCGCCGAAGACAAGCGCGAACAGAAGCTGCTGGACGAGTTGTCCCAGCGTTTGCCGCGGCACGAGGTGTTTTGAC GGGCGGATCTCGCACAGATCCCGACGCCATCGCGCCTTGCCCATGGCCCCTCCAAGTGCTAAACCTTGTACAGGTTCGTCAATGACAAGGAAGCCAGTAC
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| DNA Sequence for Gene |
>QS95_RS03480
ATGTCAGTCGTTACAGAAGTGTCTGCGGATGGGCAAAAGTTGACGATTTCCGTCAAGGGCCGATTCGACTTCGGTCGCCATCAGGAATTTCGCGAGTCCT ACGAGCGGCTCACTAAAAAGCCTGACTCCATCGTGGTGGATCTCAAGGATGCCACCTATCTCGACAGTTCGGCCCTGGGCATGTTGCTTCTGTTGCGTGA TCACGCCGGCGGTGACGACTCGGATGTGCGGGTGGTCAACAGCAATTCGGATGTGCGCAAGATCCTCGCCATCTCCAACTTCGACAAATTGTTCGACATC AGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGCCATGCAGCCGCTAGAGCCGCTGACGATCCTGATCGCCGAAGACAGCGCCGCCGACCGGCTGTTGTTGTCGACCATCGTCCGTCGTCAGGGGCATGA AGTGCTGACGGCCACCCACGGTGGGGAGGCGGTCGAGGCATTTATTCGGCAAAAGCCGCATCTGGTATTGATGGACGCCATGATGCCGGTGATGGACGGG TTCGAAGCTGCACGGCAGATCAAGAAGCTGGCGGGTGAAAGCCTGGTGCCGATCATCTTCCTCACCTCGCTGACGGAAAGTGAAGCGCTAGCCCGTTGTC TTGAAGCCGGCGGTGACGACTTTCTGGCGAAGCCGTACAACCAGGTGATCCTCGCCGCCAAAATCAAGGCGATGGATCGCTTGCGACGTTTACAGGCCAC GGTTCTTCAGCAGCGCGATCTGATCGCCAAACACCACGACTATCTGCTCAACGAGCAGCGGGTCGCCAAGGCCGTGTTCGACAAGGTCGCGCATTCCGGT
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| Amino Acid Sequence |
>anti-anti-sigma factor
MSVVTEVSADGQKLTISVKGRFDFGRHQEFRESYERLTKKPDSIVVDLKDATYLDSSALGMLLLLRDHAGGDDSDVRVVNSNSDVRKILAISNFDKLFDI S
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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