Pseudomonas fluorescens SF4c, QS95_RS26035
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF4c contig_28, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGGCAGCGACAACGTGTCGATCGAATACAAGGAGTTCGGCATCCGCCTGACCCTGACGCCCACCATCATCAGCCACGATCGCATCGCCCTGAAAGTGG CGCCGGAAGTCAGCGAACTGGACCTCAGCAACGCGGTGAACATCGCCGGCACCACCGTGCCGGCCCTGACCATCCGCCGCACCGACACCAGCATTTCTCT CGCCGATGGTGAGAGTTTTGTCATCAGCGGTTTGATCAGTACCAGCAACAGTTCCCAGGTCGACAAGTTTCCCGGGCTGGGCGATATCCCGGTGCTCGGG GCTTTTTTCAAGAGCTCGCAGATCAAGCGCGAAGAGCGAGAGCTGCTGATGATCGTCACCCCGCACCTGGTGCGTCCGCTCTCGGCGGAGGCGCAACTGC CGTCGTTGCCGGGTGAAAAACTGCGCAACTACGACCCGAATTTCTACCGCATGTTTTTCCTGGAAAACGGTAACTTCGACAAGCGCAGCGGGTTGTCCCA
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| DNA Sequence for Gene |
>QS95_RS26035
ATGAGCCAGAGCCTGAGTCAGACCTTCCTCGCCATCACCCGCAACAACACCGACCTGGAGTGGCTGCAAAGCGCGCTTGCGCCGTTGGGCCAGGTGGTCA GTGCCGGTGGCGGCAGCCTCGACGAATTGCTCGCGCTGGTGGACGTCACCTTCGCCAGCCTGGTGTTCGTCGGCCTCGACCGGGAACACGTGGTGGCCCA GAGCGCGCTGATCGAAGGCGCGCTGGAGGCCAAGCCGATGCTGGCGATCGTTGCCCTCGGCGACGGCATGGACAATCAGCTTGTACTCAATGCGATGCGC GCCGGGGCCCGGGATTTCGTCGCCTATGGCTCGCGCTCCAGTGAAGTGGCCGGGCTGGTGCGCCGCTTGAGCAAACGCCTGCCGCCGGTGACCCACAACG CGCAACTGGGCGGCCTGACGGTGTTGTACGGCGTACAGAGCAGTTCCGACGGCGCGCTACTGGCCAACCATATGGCACTGGTGGTGCAAAAGAGCGGGCA GCAGACGCTGCTGCTGGACCTCGGGCTGCCCCGTGGCGACAGCCTGGCGCTGTTGGGGCTGGAGAGCTCGTTCCACTTCGGCGATGCCTTGCGCCACCTG CGCAGGCTCGACGCCACGTTGATCGACAGTGCGTTCACCAGCGCCGAAGCGGGGCTGCGGATTCTGGCGTACGCCGACAATGACGCACCACTGGAAAGCA CCAGCGCCGCCGAGCTGTTCATGTTGCTCAGCGCCTTGCGCCAGCACTTCCAGCACATCGTCGTGAACCTCACCGGCCAGCCTGACAGCGAGGCCCTGCG AACCTTTGTCAGCCATTGCGACAAGCTGATCTGGTACACCGACCAGAGCGTGCTCGATTGCCGACGCAATCTGGCGGTGTTCAATCTGTGGCGGGAAAAA GGCATGAAGCTCGATCACGGACGGCTGTTGGTCGACCGCTATCTGAGCAACGTTGCGCCAGATGCGGACACACTCGGCAAGACTTTCAACCTGGAAGTGA TCGCGGTACTTGCCTTGAGCCCTGAGCTGCGCATGAACGCGAAGAACCAGGGCGTCAGCCTGTTTGAACTGGCGCCCAGGGAAAAACTCACCCAGAGCCT GCGGGTACTCGGCGAACGGCTGGCCAAGCGCTCCGAAGGTCTTGCCAAACCCAAGGTCACCTGGTTCGACCGGCTGCGAGGCACCTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCGGAAAAACTCTTCGGAGCGCCGGCGCGAGGCCAGTCGGGCAATGTTGACCACGAGGGCCTGAAACTGGTCCTGCATCGCTACATCATCGATGCCAT CGAGGAGTCCGGGAAAAACCTGCTGGAAGGCTCGCGGCAGTTGCTGGCGCAATTTGTGACCGACAAGGTCGCCGAATACATCGCCCGTCTGCACCTGGCG ATTTCCCGTTACGAGATGGAGCGGCTGGGGGAAGAAATCGTCGATGAGCTGACCGGCTTCGGTCCGCTGGAAGTCTTGCTGCGCGACACCGCCGTCACCG AAATTCTGGTCAACGGCCCGCACCGGGTATTCGTCGAGCGCGACGGCGTACTGCATCAGAGTGACCTGCGCTTCATCGATGCGCACCACGTCGAACGGGT CATGCAGCGCATTCTTGCGCCGCTCGGTCGGCGGCTGGACGAGTCTTCGCCGATGGTCGATGCACGCCTGCCGGACGGTAGTCGGGTCAACGCGATCATC
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| Amino Acid Sequence |
>pilus assembly protein
MSQSLSQTFLAITRNNTDLEWLQSALAPLGQVVSAGGGSLDELLALVDVTFASLVFVGLDREHVVAQSALIEGALEAKPMLAIVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLSKRLPPVTHNAQLGGLTVLYGVQSSSDGALLANHMALVVQKSGQQTLLLDLGLPRGDSLALLGLESSFHFGDALRHL RRLDATLIDSAFTSAEAGLRILAYADNDAPLESTSAAELFMLLSALRQHFQHIVVNLTGQPDSEALRTFVSHCDKLIWYTDQSVLDCRRNLAVFNLWREK GMKLDHGRLLVDRYLSNVAPDADTLGKTFNLEVIAVLALSPELRMNAKNQGVSLFELAPREKLTQSLRVLGERLAKRSEGLAKPKVTWFDRLRGTS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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