Pseudomonas fluorescens SF4c, QS95_RS25885
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF4c contig_27, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGCAAACCGATCCTGCAATTCGGCAAGCTGCACGTCGGCCTGACCAAAGTAGAACCGGCCGGTCAGTACGCACTGAAACTGACCTTCGACGACGGTCA CGACAGCGGCCTGTTCACCTGGGATTACCTGTACGAGCTAGGGCGACGTCATGACGCACTCTGGGCCGATTATCTGGCCGAACTCAAAGCCGCCGGCAAA ACCCGCGACCCGGACCAGTCCGTCGTCAAGCTGATGCTCTAGTCCGCGCCTCGGACTGTTTAGAGGGCATTTTCTAGATTCATCTGTTTGAATGCTCCGC TAAAGCGGCCCGGGATCGGCTGCTTGCGAAAAAAATCAATCTCGGGTAACCAATGGAACTGGCAAGTTCCCTGCAGTGCTCTACGACTGTAAAGCAGCTA TGCAGAATCAACGGTCACCCGAGCAGTAGTACCTGGCATTGGCTGTGGAACTGCACAGCAGAAAACCGGGTACTCGTCTCAGGACAATGGAGCGTCGTAG
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| DNA Sequence for Gene |
>QS95_RS25885
ATGAGTAACAAGAATAACGATGATTTGAAGTACCAGGCCTCGGAGAACACCCTGGGGCTGAATCCTGTCGTTGGGCTACGCGGAAAGGATCTGCTGGCCT CTGCTCGAATGGTGCTGACCCAGGCCATCAAACAACCTATCCATAGTGTCAAACACGTCACCCAGTTCGGCCTTGAACTGAAGAACGTGCTGTTCGGCAA ATCAGATCTGCAACCGGCGGGCGATGACCGTCGCTTCGTCGATCCGGCGTGGAGTCAGAACCCGCTGTACAAACGTTATCTGCAAACTTACCTGGCATGG CGCAAGGAGCTCCACGCCTGGATCGACGACAGCAGCCTCTCGCCCAAGGACATCGCGCGCGGCCACTTCGTGATCAACCTGATGACCGAGGCCATGGCGC CGACCAACACCGCGGCCAACCCGGCGGCGGTTAAACGCTTCTTCGAGACCGGCGGCAAGAGCCTGCTCGACGGCCTCTCGCACCTGGCCAAGGATCTGGT GCACAACGGCGGCATGCCGAGCCAGGTCAACATGGGCGCGTTCGAGGTCGGCAAGAGCCTGGGTGTGACCGAAGGTGCGGTGGTGTTTCGCAACGACGTG CTGGAGCTGATCCAGTACAAGCCGATCACCGAACAAGTGCACGAGCGCCCGCTGCTGGTGGTGCCGCCGCAGATCAACAAGTTTTACGTATTCGATTTGA GCCCGGACAAGAGCCTGGCGCGCTTCTGCCTGCGCAACAATGTGCAGACCTTCATCGTCAGCTGGCGCAACCCGACCAAGGAACAGCGCGAGTGGGGCCT TTCCACCTACATCGAGGCCCTGAAGGAAGCGGTCGATGTGGTCACCGCGATCACCGGCAGCAAGGACGTCAACATGCTCGGCGCCTGCTCCGGCGGCATC ACCTGCACCGCCCTGCTCGGCCACTACGCGGCGATCGGCGAGAACAAGGTCAACGCCCTGACCCTGCTGGTCAGCGTGCTCGATACAACGCTGGACAGCG ACGTCGCGCTGTTCGTCGACGAGCAGACCCTGGAGACCGCCAAGCGCCATTCGTACCAGGCCGGCGTGCTCGAAGGCAAAGACATGGCCAAGGTCTTCGC CTGGATGCGCCCCAACGACCTGATCTGGAACTATTGGGTCAACAATTACCTGCTCGGCAACGAACCGCCGGTGTTCGACATCCTGTTCTGGAACAACGAT ACGACTCGACTGCCGGCCGCGTTCCACGGCGACCTGATCGAGATGTTCAAAAACAACCCACTGATCCGCCCCAATGCACTGGAAGTGTGCGGCACGCCGA TCGACCTCAAGCAGGTGACCGCCGACATCTTCTCGCTGGCCGGCACCAACGACCACATCACCCCGTGGAAGTCCTGCTACAAGTCGGCGCAGCTGTTTGG TGGCAAGGTCGAATTCGTGCTGTCCAGCAGCGGGCATATCCAGAGCATCCTGAACCCGCCGGGCAACCCGAAATCGCGCTACATGACCAGCGACGAAATG ACCGCCAATGCCGATGACTGGCAGGAAAACTCGACCAAGCACGCCGACTCCTGGTGGCTGTACTGGCAGGCGTGGCAGGCGGCCCGTTCGGGCGAATTGA AGAAAGCACCAACGAAACTGGGCAACAAGGCGTATCCGGCAGGCGAAGCTTCACCGGGCACTTACGTTCACGAGCGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGACACACCTCACTCCCTTTCGGGAGTGAGGTGAACACTGAGATTGCGACCCACAGGGCCTTGAAGCATGCCGCACCCGTTCATCTTTCGAACCGTCGA GCTGGATGGCCAGACCATCCGCACGGCGGTCCGCCCCGGCAAGCCTCACTTGACGCCCTTGCTGATATTCAACGGCATCGGCGCCAACCTGGAGCTGGTG TTTCCTTTTGTCGCGGCGCTGGATCCGGACCTGGAAGTGATCGCCTTCGACGTGCCCGGTGTCGGTGGCTCTTCGACGCCGAGCCGTCCGTATCGCTTTC CCGGGCTGGCGAAGCTCACCGCGCGGATGCTCGATTACCTCGACTACGGACAGGTCAACGTGATCGGCGTGTCCTGGGGTGGCGCGCTGGCGCAGCAGTT CGCCTACGACTATCCCGAGCGCTGCAAGAAGCTGGTGCTGGCAGCGACCGCCGCCGGTGCGGTGATGGTGCCGGGCAAGCCGAAGGTGCTGTGGATGATG
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MSNKNNDDLKYQASENTLGLNPVVGLRGKDLLASARMVLTQAIKQPIHSVKHVTQFGLELKNVLFGKSDLQPAGDDRRFVDPAWSQNPLYKRYLQTYLAW RKELHAWIDDSSLSPKDIARGHFVINLMTEAMAPTNTAANPAAVKRFFETGGKSLLDGLSHLAKDLVHNGGMPSQVNMGAFEVGKSLGVTEGAVVFRNDV LELIQYKPITEQVHERPLLVVPPQINKFYVFDLSPDKSLARFCLRNNVQTFIVSWRNPTKEQREWGLSTYIEALKEAVDVVTAITGSKDVNMLGACSGGI TCTALLGHYAAIGENKVNALTLLVSVLDTTLDSDVALFVDEQTLETAKRHSYQAGVLEGKDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIEMFKNNPLIRPNALEVCGTPIDLKQVTADIFSLAGTNDHITPWKSCYKSAQLFGGKVEFVLSSSGHIQSILNPPGNPKSRYMTSDEM TANADDWQENSTKHADSWWLYWQAWQAARSGELKKAPTKLGNKAYPAGEASPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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