Strain | Pseudomonas fluorescens strain SF4c contig_2, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCGAGGGCGGCGAGTTGCTGGCCGAACATTTCTCGCTGCGTCTGGAATCGGCGTCGGTGCCGGAAGACCACTGCGGCCTCAATCTGCGCGAACGACTGGA AGCGGTCGAACGCAATCTGCTGCTCGATTGCCTGCGCAAGAACGACGGCAACCAGACGCTCGCCGCCCGCGAACTGGGCCTGCCGCGCCGCACGCTGCTG TACCGGCTCGGCCGCTTGAACATCAATCTGGGTGATTTCGATGGGTAGGCGAAAGTCCGTCGGATTCACCTCGAACACCTATTTCAGCGCCGCCCGCAAG GGTCGGCGCTTTGTGCTTTGTCTACACCTGGAGACCCTCTGATGTCTGTTCGTCACTGGCACGCTGTCCTGCTGACCCTCGTCGTTCTATGCGGCCTCGG CGGTTGCAGCGGCAATTACAAATTCAACGATAACGATTACCGCCCGCTGGGTGATCCGCAGGCGGTCAATCGCGGCAAGTGACCGCAAGGAGCATCAAAC
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DNA Sequence for Gene |
>QS95_RS02135
ATGGAATTGGTTTTCGAAATGCTGAACACCAAGCAGTTCGTGCCCACCGAGCTGTGCCAGCGGACCTTCAAACAGGCCGGTGGCGTGATCGGGCGGGGCG AGGACTGCGACTGGATCATCCCTGACCGCAAGCGGCACTTGTCCAACCACCACGCGATCGTCAGCTATCGCGAGGGTTCGTTCTTCCTGACCGACACCAG CAGCAACGGTGTGCAGGACGGCGACAGCGGCGCACGCCTGCACAAGGGCGAACCGGTGCGTATCGAGCACGGCAGCACCTACGTGCTGGGCGACTTCGAG ATTCGTGCGCGCCTGGTGCGTGACCCGGCGACCTTCGACGGTGAAGTCGGCCTGCCACGTGCCGCCGGCAGCATCATCCCGGACGACGCGTTCCTCGACC TCGACCCGCTTAAGTCGCTGGAGCAGCAAGAGCGCGTGTACTCGGAATTCGAGGAAATGCTCGCACCGGTGACCGACCCTGAAGACTCCCGTCAGCGCGC CGACTACGCGCGCATCGACATGGAAAGCCTGATGGTGCCGGAGCTGATCGTCGAGCCCACGCCTGAGCCTGCGCCGGCGCCGAAAGCGGTCGAGCGTCAG AGCGAAACCTTCTGGGATAAATTCGGCGCGGCCCTTGGCGTGAACGTGAAGAACCTCAGCCACGACGAGCGTGAAGCGCTTGCGCTGAACGCTGCACGTC TGCTGCGCCAGAGCATCGGCGGTCTGCAACAGAGCCTGCGCACCCGTTCGGAGCTGAAAAACGAACTGCGTCTGGCCCAGACCACCGTACAAGGCACCAA CAAGAATCCGCTGAAATTCGCCGTCGATCCGAGCGAAGCGCTGGACATCCTGTTGCAACCGCACAAGCCGGGCCATTTGCCGGCCGAGCAGGCGATCTCC CGGGCGTTCCGCGATTTGCAGGCGCATCAGGTGGCGCTGCTGACCGCCAGCCGCGCGGCGGTGCGCGGCACTCTGGAGCACTTCTCGCCGGAGCAGTTGA CCCTGCGTTTCGAGCGCGACAACAAGCCGTTGCTCGCCACCGCCGGCGGGCGCTGGAGAGCGTTCAACCGTTACCACCATGCGCTGCGTCAGGACGACGA CTGGAGCGAGCGCCTGCTGGCCCGCGACTTCGCCCAGGCCTACGAAGAACAGATCCGCCTGATCTCCACCCTCCACACCGACCACCAAGGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TGCGCATGTCTCGCCGCTCGACCGCTTTTTTCAAGACGCTGACCGCGCTCACCCTGTTGGTGCTGCTCGCCGGTTGTTCGTCGCTGTCGCCGTATTCGAA AGTGACCAAGATCAACCTGAAGCTGACCGGCAGCGATCAGCTGAACCCGGATCTCAATGGTCGTCCGTCGCCGATCGTGGTGCGCCTGTTCGAACTCAAG CACCCGGTGACCTTCGAGAACGCCGATTTCTTCAGCCTCTACGAGCGCGCCAAGGAATCCCTCAACCCGGATCTGGTGGCCAGCGAAGAACTCGAACTGC GCCCGGGTGAAACCGTGGAACTGAAACTCAGCGTGGAGGAGGGCAGCCGCTTCATCGGCATCCTCGCCGCGTACCGCGACCTGCCGGAAACCAAATGGCG CCACACGTTCCCGATCACACCGCTGGAAGTCACCGAAGCCGATCTGACCCTGGATCAAGCCGGTATCCGCAAGACCAACGAAGTGCTCGCCAAGGCGGAT
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Amino Acid Sequence |
>hypothetical protein
MELVFEMLNTKQFVPTELCQRTFKQAGGVIGRGEDCDWIIPDRKRHLSNHHAIVSYREGSFFLTDTSSNGVQDGDSGARLHKGEPVRIEHGSTYVLGDFE IRARLVRDPATFDGEVGLPRAAGSIIPDDAFLDLDPLKSLEQQERVYSEFEEMLAPVTDPEDSRQRADYARIDMESLMVPELIVEPTPEPAPAPKAVERQ SETFWDKFGAALGVNVKNLSHDEREALALNAARLLRQSIGGLQQSLRTRSELKNELRLAQTTVQGTNKNPLKFAVDPSEALDILLQPHKPGHLPAEQAIS RAFRDLQAHQVALLTASRAAVRGTLEHFSPEQLTLRFERDNKPLLATAGGRWRAFNRYHHALRQDDDWSERLLARDFAQAYEEQIRLISTLHTDHQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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