Pseudomonas fluorescens SF4c, QS95_RS02120
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF4c contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAACGCCTGCTGCCGTACCTCGGCCTGCTCAGTCTGCGGGCGCACTCGGCGGCGCTGATCGAAGCGGTGCTGCGTTACTACTTCAAGCACGAAGACCTGG TCATCGAGCAATGCATCGAGCGCCGCGTGGAAATCCTCGAAGAACAGCGCAACCGCCTCGGCTTCGCCAACAGCGTGCTGGGTGAAGACCTGGTGCTGGG CGAACGCGTGCGCGATCGCAGCGGCAAATTCCGCATTCACATCACCGAACTCGACTGGGAACGCTTCCACGAATTCCTGCCCATCGGTTTCGGTTACCAG CCGCTCTGCGCGCTGGTGCGGTTCACCCTGCGTGACCCGCTCGATTACGACATTCGCCTGGTGCTGCGCCCGGAAGAAATCCGCGAACTGCGCATTGGCG AGAAGAACGACTGTCGCCTGGGGTGGACCAGTTGGCTGGGCTGCGAAAAAGCAGACGGCGTGGTGACCCTGGGCAGCAAAATTCATTAAGGACGTGAGCC
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| DNA Sequence for Gene |
>QS95_RS02120
ATGATCAACGTAGACCTGCAACAACTCATCCAGGCGCTGGACGCCGAAACCCGTCGCGATCTGGAGCGTTCGGCCGAGCGCTGCGTGGCCCGTGGCGGCA GCAAGATTCTGGTCGAAGACTTGCTGCTCGGCCTGCTGGAGCGCCCGAACGGTCTGCTCTCCCGTGCGCTGCAGGATGCCGACGTTGATGCCGGCGAACT GAGCGCCGCGCTGCAATCGCGGGTCGAGCACAGCGCTTCGCGCAACCCGGTGTTCGCTCCGGAACTGGTGCAGTGGCTGCAGGACGCGCTGCTGGTGGCC AACCTTGAACTGGGCCAGACCTCGGTCGAAGACGCGGCGCTGATCCTCGCGCTGCTGCGCAACCCGATGCGTTACGCCGGCAGCCGCTACCAGCCGTTGC TCGCCAAACTGAACATCGATCGCCTGAAGGAATTTGCCCTGTCGCAACAGCCTCAGGCAGCAGCCAACGGCAAACCGGCCGCCCAGGGCGAATCGTTGCT CGAGCGCTTCACCCACAACCTGACCCAACAGGCCCGCGACGGCAAACTCGACCCGGTGCTGTGCCGCGATGGCGCGATCCGCCAGATGGTCGACATCCTC GCCCGTCGCCGCAAGAACAACCCGATCGTGGTCGGTGAAGCCGGTGTCGGTAAAACCGCCATCGTCGAAGGCCTGGCCTCGCGCATCGCTGCCGGTGAAG TGCCGCAAGTGCTCAAAGGTGTCGAGCTGCTGTCGCTGGACATGGGCCTGTTGCAGGCCGGCGCCAGCGTCAAAGGTGAGTTCGAGCGTCGTCTGAAAGG CGTGATCGACGAGGTCAAAGCCTCGCCGAAGCCGATCATCCTGTTCATCGACGAAGCCCACACCCTGATCGGCGCGGGCGGCAATGCCGGCGGTTCCGAC GCGGCCAACCTGCTGAAGCCGGCGCTGGCCCGTGGCGAGCTGCGCACCATCGCCGCGACCACCTGGGCCGAGTACAAGAAATACTTCGAGAAAGACCCGG CGCTGGCCCGTCGTTTCCAGCCGGTTCAACTGCACGAACCGACCGTGAGTGAAGCGGTGACCATCCTGCGTGGCCTGGCTCAGGTCTACGAGAAGAGCCA CGGCATTTACCTGCGCGACGACGCGGTGGTTTCCGCAGCGGAACTGTCCGCCCGTTATCTGGCCGGTCGGCAACTGCCGGACAAGGCTGTCGATGTGCTC GACACCGCGTGCGCCCGTGTTCGCATCAGCCTCGCTGCGGCTCCGGAAAGCCTGGAACGCCTGCGTGGTGAGCTGGCTGAAGGTGGCCGTCAGCGTCAGG CCCTGCGCCGCGATGCCGAAGCCGGTCTGCTGATCGACCACGAAGCGCTGGAGGCACTGGAAGCGCGTCTGGACGAAGCCGAAGCGGAAAGGGTCGCACT GGAAACCCAGTGGACCGAGCAGAAACAACTGGCCGAGCGCCTGCTGGAACTGCGTCAGCAACTGGCCAAGGCCCGTGAAGCCGCTGCGGTCGAGCCGGTT GTCACCGTTGAGGAAGACGCCGAAGGCACCGTGATCGAAACTCACGCCGCCGAAGTCGACGAAGCCCTCAGCGTCGAAGCGCTGGAAGCGCAACTCAACG AAACCCACAGCGCCCTGACCGCCGCACAGGTCAAGGAGCGTCTGGTCAGCTTCGAAGTCTGCCCGCGTCTGGTGGCCGAAGTGATCAGCGCCTGGACTGG TGTGCCGCTGGCGCAACTGGCCCGCGAACACAACGCCAAGGTCGCCAGCTTCGCCACCGACCTGCGCACCCGCATCCGTGGTCAGGAACAAGCCGTGCAC GCACTGGATCGCTCGATGCGCGCCACCGCTGCCGGCCTGAACAAGCCTGACGCACCGGTCGGCGTGTTCCTGCTGGTCGGCCCGAGCGGCGTCGGCAAGA CCGAAACCGCACTGGCACTCGCCGACCTGCTATACGGCGGCGACCGTTTCATCACCACCATCAACATGTCCGAGTTCCAAGAGAAACACACCGTTTCCCG CCTGATCGGTGCACCGCCAGGCTACGTCGGTTACGGCGAGGGTGGCATGCTCACCGAAGCCGTGCGCCAGAAGCCGTATTCGGTGGTGCTGCTCGATGAA GTCGAGAAGGCCGATCCGGACGTGCTCAATCTGTTCTACCAAATCTTCGACAAAGGCGTGGCCAACGACGGCGAAGGGCGCGAGATCGACTTCCGCAATA CGCTGATCCTGATGACCTCGAACCTGGGCAGCGACAAGATCAGCGACCTCTGCGAAGACGGCGCGCGTCCGACCGCCGAAGTGCTGGAAGAAACCATTCG CCCGGTGCTCAGCAAACACTTCAAACCGGCGCTGCTGGCGCGGATGAAAGTGGTGCCGTACTACCCGGTCGGTGGCCCGGTGCTGCGCGAGCTGATCGAG ATCAAGCTCGGTCGTCTGGGCGAACGTCTGAACCGTCGCCAGCTGGACTTCACCTGGTGCCAGAACCTCGTCGATCACCTGTCCGAGCGATGCACGCAAA GCGAAAGCGGTGCGCGCCTGATCGACCACTTGCTCGACCAGCACGTACTGCCGCTGGTGGCCGACCGCTTGCTCGACGCCATGGCCACCGGTGAAAGCCT CAAGCGCGTGCATGCGACGCTCGACGGTGAAGCCAGCGTGACCTGCGAGTTCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTGAGTGTGATGTTCACTCAAGTGCCGCAACCACTGCTCTATGCCGAAGCCTTGCTGGCGCAGTTCGCCAGCCTGTCGCGGGCGGCGGACGGTGCTGCG CTGCTGGGTGACTTCGTGCGCGGTCTGGCCGGGCTGAGCGGTTGCGAACTGACGCAGCTGTACTTGCTGGACGCTACGCACACGTCGCTGGGGATGAATG CCGAATGCCTCGACGGCGTGCTGCAACCGCGCAGCGCGGCGAGTCTGCCGGCGGACTACAACGGCGAGCAACTGTTGCAATTCGCCCTGTGCCAGAACCG CGTGGTGAGCTTCGACGACCTGGGCGGCAGCCTGCACGAAACCAGTTTTCTGCCGGCGTCGTCCGCGCCGTGGCAGTCGCTGCTGTGCGTGCCGCTGGTC AATCAGCAAAAGGCCGTCGAAGGCCTGTTGCTGTGCGCCAGCCGTCGCCACATCAACCTGCAAGGCTTCGCCGATTCCCTCGGTCAGCTCGGCTCGTTCG
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| Amino Acid Sequence |
>ATPase AAA
MINVDLQQLIQALDAETRRDLERSAERCVARGGSKILVEDLLLGLLERPNGLLSRALQDADVDAGELSAALQSRVEHSASRNPVFAPELVQWLQDALLVA NLELGQTSVEDAALILALLRNPMRYAGSRYQPLLAKLNIDRLKEFALSQQPQAAANGKPAAQGESLLERFTHNLTQQARDGKLDPVLCRDGAIRQMVDIL ARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQVLKGVELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSD AANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQVYEKSHGIYLRDDAVVSAAELSARYLAGRQLPDKAVDVL DTACARVRISLAAAPESLERLRGELAEGGRQRQALRRDAEAGLLIDHEALEALEARLDEAEAERVALETQWTEQKQLAERLLELRQQLAKAREAAAVEPV VTVEEDAEGTVIETHAAEVDEALSVEALEAQLNETHSALTAAQVKERLVSFEVCPRLVAEVISAWTGVPLAQLAREHNAKVASFATDLRTRIRGQEQAVH ALDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALALADLLYGGDRFITTINMSEFQEKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDE VEKADPDVLNLFYQIFDKGVANDGEGREIDFRNTLILMTSNLGSDKISDLCEDGARPTAEVLEETIRPVLSKHFKPALLARMKVVPYYPVGGPVLRELIE IKLGRLGERLNRRQLDFTWCQNLVDHLSERCTQSESGARLIDHLLDQHVLPLVADRLLDAMATGESLKRVHATLDGEASVTCEFA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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