Pseudomonas fluorescens SF4c, QS95_RS22390
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF4c contig_18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACGTACTGCCGACGCCACCGACCAAACTCGGGGGTCTGCTGCGCAACAGCTTCAATCGCGGTCTGTACTGGGCGGTGGCCCGTGGAATGCTTTGACCCT GCACAGGGAGGAGTGATTGCTGATGAAAGAGTCTGAAGCCCTGTCGGCCACACCCGGCTACACCGCCCTGATGGCCAAACTACAGCCATTGATTGATGGC GGACGGCTGGAGAACATTATCGATCTGCTTTCCCTGCTGTCGGATCTGGTCGACCTGTTGGATGAAGCCATGGTGGAGAAGCTGTCCTTGCTGGTCGAAC AGGCGGCAGCCTGCAGTTGGGAGATGGCCAATGCTCTGCGTCTGGCGAAGGCTGAAGTCGCTGCGCACCACCAGGCACCAAGCGCCGTTGCACTGCTCAA ACTGTTGAACGACAGCGATACACGCAAAGGAGTAGCCGTTGTCCTGAAAGCGCTCAACGTCATCGGAAGACAACTTTAACTCGCCAGAGAGGATCACCTC
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| DNA Sequence for Gene |
>QS95_RS22390
ATGAGCGTAAAACTCGAAACGCCGGGCAAGCCCTGCTCTGACTGGGATGCCCGGGCGTACCAGCAGTTTTCCCGTCTCAGACAACAACCGGTCGATGAAT TGCTCGGCCGTGTCGACCTGAACAATCCTCAGCGCATTTATGACCTCGGTTGCGGCACCGGGATTGCCACCAAGGTTCTGGCCGATCGCTGGCCGCAGGC AGATATCAAAGGCATCGACAGTTCGAAAGACATGCTTGAGGTCGCCCGTTGCCTGCCGATCAAGGCGCGCTGGCAACACGCCGAACTGCAGCACTGGAAA CCCCGCAAGCCGGCCGACCTGTTGTTCGCCGCGGCCGTGCTGCATTTCATCGATGACCATCAAACGCTGTTGCCGGGACTGCTTCGCCACCTCAACCCTG GCGGGTGCCTCGCCGCGCACATGCCGGACTGGCGTGATGCGCTGTGGTATCAGCTGATGCTCGACACCCTTGACGACGCCGGTCCCTGCGGTCGCCCCAT CGGCACTGCACAATTGCGCCAGCGCATGGCCGCGCGGCCGTTGTTGTCGCTGGAGGCTTACTACCGGCTGCTGGCCCCGCTGACCCAGTCACTGGATATC TGGGAAACAGAGCAATTGCAGGTGGTCGACGGCAAGTCGCCGGTTTATGACTGGGTGAAGGTGTCGGCGCTGCGGCCGGTGATGCAGGGGCTGACGTCAG AGGAACAGGCGCGCTTCATTTATCACTACCTGATGCGGGTGCATACGCACTATCCGCAGGAGGAAAATGGCCATACGTTGTTTGCGTTCAAGCGGATTTT CATTGTCGCCAAGGTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTTTCAAAGGATCGCAGCCAGTTGAAGACTGCGATCCCTTGAGTTCAACGATCACTCGCGGGATTCGGTACCCAGCTCATCCCACACCGACTCGGCCAGA TGAAAGGTCGCATTCGCCGCCGGAATCCCGCAGTAGATCGCGCTCTGCATGATCACTTCCTTGATCTCGCCGCGACTTACGCCATTGTTTGCCGCCGCCC GCAGATGCAACTTCAGTTCACCTTCGCGGTTCATGCCGATCAGCATGGCGATGGTGATCAGGCTGCGGGTGTGGCGTGGCAGGCCCGGGCGGGTCCAGAT GTCGCCCCAGGCGTGACGGGTGATCATCTCCTGGAACTCCGAGTTGAACTCGGTCAGCGTGGTCAGGCTGCGATCGACATGAGCGTCGCCAAGCACCGCG CGGCGCACTTGCATGCCGTCGTCGTAACGTTGTTTCTCGTCCACGAAAATCCTCCTTCAGTCAGCCAGCAGGAATGTCAGCACACGGTCGCTGAACGCGT
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| Amino Acid Sequence |
>trans-aconitate methyltransferase
MSVKLETPGKPCSDWDARAYQQFSRLRQQPVDELLGRVDLNNPQRIYDLGCGTGIATKVLADRWPQADIKGIDSSKDMLEVARCLPIKARWQHAELQHWK PRKPADLLFAAAVLHFIDDHQTLLPGLLRHLNPGGCLAAHMPDWRDALWYQLMLDTLDDAGPCGRPIGTAQLRQRMAARPLLSLEAYYRLLAPLTQSLDI WETEQLQVVDGKSPVYDWVKVSALRPVMQGLTSEEQARFIYHYLMRVHTHYPQEENGHTLFAFKRIFIVAKV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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