Pseudomonas fluorescens SF4c, QS95_RS21465
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF4c contig_17, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGTTCGTGAATGGCAGCCGCGCACCCAACTCGCAGTGCTCGAAGGCGCTGTGCAAGTCGAGCTGGCCGACAGCCCACAGAGCGCGCCGATCATCGTCAA CGCCGGGCAACGTACCGACTTTTCATCACAGGCCTTTGGCTCGCTGAACCCGACCGACCGCAACGTTGGCGCCTGGACCGAGGGCATGCTGATGGCGGAC AAGATGCGGCTGGCGGATTTTGCTGTCGAACTGGCGCGCTACCGCCGAGGCATTGTGCGGTGCGATCCAGCCATTGCCGACCTGCGCATTTCCGGGGCCT TTCCCATCAGTGATACCCAACGCTCGCTGAACATGCTGGCGCAGACCTATCCCGTGCGCGTCTCCGGGCACTTGAGTGGTTACTGGGTGACGCTCTCACC CGCCTGAGCAAAAAAATCACCGCACGGGTGATACTTTTTTTGATCTCGGCTGGCTATGAAAGGAACAACCATTCCACCTCGTCCATAGGGTCATCCCTTC
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| DNA Sequence for Gene |
>QS95_RS21465
ATGCTCGTTGCACGACCCTTGCTTGCGGATCGTCTGCTAAAGCCCGTTATGCGCGGCGTGTTGCTCAGCGTTGTGCTGGGCCTGGCCAGCAGCGCGCTCG CCGAGGCAGCCAGGCCGGTGCAGCTGGACGCGGTCACTGTGCGAGCCTACAACATCGGGCCCGGCCCGCTTGGCGTGACCCTCTCGAGCTTTGCCGTGGA CGCCGGTATCGCCTTGTCGTTTCAGCCGTCGATCACCGAAGGCCTCGTCAGCCCTGGATTGTCCGGCAGCTACTCGGTGCAGGAAGCGGTGTCTCGACTG CTCGAAGGCAGTGGCCTGGAGATGGTCGCTCGCAGCGACGGGACCTGGACGCTGGTAGTGCGCCGGGTCACGTTGTCGGACACCACGGTCGAAGGCATCG ACACGCGCACCGACAGCTTGCCGCCGGTGCTTGCGGGCGGTCAGGTCGCCCGCGGCGGACGCCTTGGCATTCTGGGCAACCGCGATGCGATGGACGCTCC GTTCAGTGTCAGCAGCTACACCTCGACACTGATCAAGGACCAGCAGGCTGTCACCGTCGGCGACTTGCTGGAGCGCGACTCATCGGTGCGTTCCACAGGG CAGACAGGCGGGATTGTCGACTCGTTCTTCATCCGTGGTTTTCCGGTCGGCGAAGGCAACCTCGGTGAACTGGCGTTCGACGGCGTGTACGGCGTGGCCT CCAACTACCGGGTGTTCACCGAGTACGCCGAACGGATCGAACTGGTCAAAGGCCCCGGCGCCCTGCTCTACGGCATGTCGCCCAACAGCGGTGTCGGCGG CGTGATCAACGTGGTACCCAAGCGTTCACTGGACGAAGACCTGACTCGTTTCACCACCAGTTACGCCTTGAATACCCAGCTCGGCGGCCACCTCGATGTC AGCCGACGCTTCGGTGAAGAACGCCGCTTCGGCGTGCGGATCAATGGCAGCGTCCAGCAAGGCGATACGGCTATCGACAAGCAATCCCGAGAGGTCGGTA TCGGCGCGATGTCCCTCGACTACCAGGGCGAACGCCTGCGCACCACCCTGGACCTGATCAATCAGAAAGAGAGTTTCGACGCCGCATCCCGCCCCTTCCT GATTGCCTCCGGCGTGGAGATTCCGTCCGCAGCCAACGGCCGCACCAGCGTCAGCCAGGAATGGGGCTGGTCGGAAACCCGCGACAAATCGGCGTTGCTC GGCGGCGAATACGACCTCAACGACAACCTGACCGTGTTCGCCCACGCCGGTGGTGGCCGATCGGATGTCGCGCGCATGTCCGACCAGACGCCGACCATCA TCAATGAAGCGGGCGACACCTCGTCGATCCCCGGCTATTACAAATTCGAAGTCCAGCGCTACACCGTCGATGCCGGTGCGCGGCTGCGGTTCGACACCGG GCCGATCAGTCATAGCACGGCGCTACAAGTCACCCGCTACCGCGATAACTTGTCCCGGGGGATTATTTCCGGCCCGGCGATCCTGTCGAACATCTATCAC CCGCTCGATCGCCCGAAACCCGCGATCGCCAAGCCGGATACCCCGAAGGTTTCCGAAAGCGAGCTGTCGGGCGTGGCCCTTGCCGACACCCTGTCGGTGC TCGATGAACACCTCCAGGTCACGCTCGGCGTGCGCCAGCAGAACATCAAGTCGGATAACTACAACACGGCAGGCTCAATCACCACGTCCTACGACAAAAG CAAATCCACGCCGCTGTTCGGGATCGTCGCCAAGCCCTGGGACCACGTCTCGCTCTACTACAACTACGTCGAAGGCCTGGGCAAGGGTGACATCGCGCCG TCTACCGCTGCCAACGCGGGCGAGATCTTTTCCCCTTATGTGTCGCGCCAGCAGGAAGTCGGGGTCAAGCTCGACTACGGCCGTTTCATGTCCACCATCG CCCTGTTCCAGCTTGAAAAGCCCAGCGGTGAACTGTCATCCGGAGTGTTCTCGGTCAATGGCGAACAGCGCAACCGTGGCGTCGAACTGAACATGGCGGG CGAGATTGCAACAGGCACACGCCTGATCGGGGGCGTGACGCTGCTCGACGGCGAACTGACCCGAACCGGTGTCGCTGCCAACCGTGGCAACAAACCGGTC GGGGTTCCCGAAGTGCAAGCCAACCTCTGGGCCGAATGGGACGTGCCGCAAGTCGAAGGCCTGACATTGACCAGCGGCGCGATCTACACCGGCAGCCAGT ACGTCAATCAGGCCAACACCCAACAACTGGACGCCTGGACCCGCTTCGATGTCGGCGCGCGCTACGCCACCCGCATCGCCGAACGGCCGACCACTTTGCG GGCCACCGTGCAGAACGTGTTTGACCGTGAATACTGGTCGGGCGTCGCCTCCTACGGCGCGTTCTCCCAGGGCGCGCCTCGGACCTTGTTGCTCTCGGCC ACTGTCGATTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACGTCCGGTCCGGAGCGGCGCCTGGCGTCGTGGTCCGATCCGGCTTTTGCAAAGGCATACACCATGGTTAATGTTTTTCGCCTCCGCCAGACCTTCGCC GCCCTGCTGATCGCCGGGCTGCTGGGTTTGTCGATTTCTTCCTTGATGCCAAGCCGCGTACAGGCTGGCGAAGCGGATCCGGCACTGGGCACCGTGACTG ACTTGCAGGGCCGCACGGTCAAGGTTCACCTGCCGGTGCGCCGGGTCATTCTGGGTGAAGGTCGCCAGCTGTATCTGGTGGCCGCGCTGGATACGCAGAA CCCTATCGAACGCATCGTCGGCTGGCGCAAGGATTTGATCCAGTCCGACCCGGACACCTATAACGCCTACCTGCGCAAATTCCCCGACATCGCGAAAATC CCGACCTTCGGCGGTTTCGAGAGCGGCACCTTCGACATCGAGCAGGCGATCTCGCAGAAGCCTGACGTGATCATCCTCAACATCGAAGCGCAGCACGCAA
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| Amino Acid Sequence |
>energy transducer TonB
MLVARPLLADRLLKPVMRGVLLSVVLGLASSALAEAARPVQLDAVTVRAYNIGPGPLGVTLSSFAVDAGIALSFQPSITEGLVSPGLSGSYSVQEAVSRL LEGSGLEMVARSDGTWTLVVRRVTLSDTTVEGIDTRTDSLPPVLAGGQVARGGRLGILGNRDAMDAPFSVSSYTSTLIKDQQAVTVGDLLERDSSVRSTG QTGGIVDSFFIRGFPVGEGNLGELAFDGVYGVASNYRVFTEYAERIELVKGPGALLYGMSPNSGVGGVINVVPKRSLDEDLTRFTTSYALNTQLGGHLDV SRRFGEERRFGVRINGSVQQGDTAIDKQSREVGIGAMSLDYQGERLRTTLDLINQKESFDAASRPFLIASGVEIPSAANGRTSVSQEWGWSETRDKSALL GGEYDLNDNLTVFAHAGGGRSDVARMSDQTPTIINEAGDTSSIPGYYKFEVQRYTVDAGARLRFDTGPISHSTALQVTRYRDNLSRGIISGPAILSNIYH PLDRPKPAIAKPDTPKVSESELSGVALADTLSVLDEHLQVTLGVRQQNIKSDNYNTAGSITTSYDKSKSTPLFGIVAKPWDHVSLYYNYVEGLGKGDIAP STAANAGEIFSPYVSRQQEVGVKLDYGRFMSTIALFQLEKPSGELSSGVFSVNGEQRNRGVELNMAGEIATGTRLIGGVTLLDGELTRTGVAANRGNKPV GVPEVQANLWAEWDVPQVEGLTLTSGAIYTGSQYVNQANTQQLDAWTRFDVGARYATRIAERPTTLRATVQNVFDREYWSGVASYGAFSQGAPRTLLLSA TVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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