Pseudomonas fluorescens SF4c, QS95_RS19695
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF4c contig_15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTGATCGCCGCCGTCAATAATCAAGGAGTCGCGCATGCGTAACCTCAAACGCATTCTTCTTGGCGTGCTTGTTCTTTTGCTGATGCTGGTAATACTGG CATTTGTTCTTGAAAACCAGCAGTCGGTTTCGTTGCTGTTTCTCGGCTGGGCTGGTCCACAATTGCCCGTGTCCCTGGTGATGGTCCTGGCGCTTTTGGC AGGGATGCTGATTGGTCCCGTGCTGGGGTGGTTTTTAGGGCGATCCTCCAGAGCTGCGCGCAAGCGCCTTGTCTGATGGGGCGGTTGGGGCGCACCCCTG AAATTGCGCCGCTTCCTGTCTGCATCCATTAGTAAAACGTTCATTAAGCTGTAAAATGCAACCCTTGTTCGATAGTGGCTAAATCCCACTTCGGCACAGA CTGATTCCGGCAATGGCCCTCATCTCCAGACGGCTTGCGCATCCATGGATTAGACGGTGCTCCGATCGGTGCCGTCAGTGACTCAAGGGTATGTTCTTTC
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| DNA Sequence for Gene |
>QS95_RS19695
GTGAAAATTCTAGTGACTGGTGGTGCTGGATTTATCGGCTCGGCAGTAATTCGGCATATTATTGCCAATACTTCTGATGCGGTTGTAAACGTCGATAAGT TGACCTACGCCGGCAATCTCGAGTCATTGGCCGAAGTTAGCGATAGTCCCCGTTATGCGTTCGAGCAGGTGGATATCTGTGATCGGGAGCAGATTGACCG TGTTTTTCGTGAGCATCAGCCTGATGCGATCATGCACCTCGCTGCAGAGTCCCATGTAGATCGTTCGATCTCCGGTCCTTCGGAGTTTATTCAGACCAAC ATTATCGGCACTTACAATCTGCTCGAAGCGTCGCGTCTGTATTGGCAATGCCTGGAGCAGGACCGCAAGTCGCTGTTTCGCTTTCACCATATTTCGACCG ATGAAGTGTACGGTGATCTTGAGGGGGTGGATGATCTGTTTACTGAAACCACACCTTATCAGCCAAGTTCTCCTTACTCTGCCAGTAAGGCAAGTTCCGA TCATCTGGTGCGCGCATGGAGTCGCACCTACGGGTTGCCGGTTCTAATTACCAATTGCTCGAACAATTATGGGCCTTGCCATTTTCCGGAAAAACTTATT CCACTGGTTATTCTCAACGCCCTTGAAGGCAAGGCGTTGCCTGTTTACGGCAAAGGTAATCAAGTGCGTGATTGGTTGTATGTCGAGGATCATGCTCGAG CGTTGTACAAAGTTGTGACTGAAGGTGTTGCAGGGGAGACCTATAACATTGGTGGGCACAATGAGAAGCAGAATATCGAAGTCGTTAAAACACTCTGCGC GTTGCTCGACGAGTTGTGCCCGGAGTCGCCACATCGTCCTCACGCTGGCTTGATCACCTACGTCCAGGATCGCCCGGGGCACGATCAACGCTACGCGATC GACGCAAGCAAGATCCAGCGCGAGTTGGGCTGGGTGCCATCGGAAAGTTTCGAAAGCGGTATTCGCAAGACTGTCGAGTGGTATCTGAAAAATACCCAGT GGGTCGCGAACGTGAAGAGCGGCAGCTATCAGCAGTACATCGACCAGCATTACCGTAACCGCCCGGTTCAAGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAATTCTGTTGCTCGGAAAAAATGGTCAGGTCGGTTGGGAGTTGCAGCGTTCTCTTGCCCCATTGGGGGAACTGATCGCGCTTGACCGGCTTGGCCAGGC TGGCTTGTCCGGGGATCTTTCGGATCTGCAGGCTCTGCGCGCAACGATTCGCCAGGTGGCTCCCGATGTTGTGGTCAACGCCGCGGCCTATACCGCAGTG GACAAGGCTGAATCCGATACTGAAATGGCTGACAGGATTAATGCGCGTGCAAGTCAGGTCATTGCCGAAGAAGTTGCATCCCTGGGCGCCTGGCTGATTC ATTACTCTACCGACTATGTATTTGACGGGCAGGGTGATGCACCTTGGCGCGAGGCGGATCAGACAGCCCCTCTCAACTACTACGGCTTGAGCAAGTTGAA CGGTGAGAACGCCATTATCGCCAGTGGCTGCCGCTATCTGATTTTTCGCACGAGTTGGGTTTACGCGGCACGAGGCAATAACTTCGCGAAAACCATGCTT
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| Amino Acid Sequence |
>dTDP-glucose 4,6-dehydratase
MKILVTGGAGFIGSAVIRHIIANTSDAVVNVDKLTYAGNLESLAEVSDSPRYAFEQVDICDREQIDRVFREHQPDAIMHLAAESHVDRSISGPSEFIQTN IIGTYNLLEASRLYWQCLEQDRKSLFRFHHISTDEVYGDLEGVDDLFTETTPYQPSSPYSASKASSDHLVRAWSRTYGLPVLITNCSNNYGPCHFPEKLI PLVILNALEGKALPVYGKGNQVRDWLYVEDHARALYKVVTEGVAGETYNIGGHNEKQNIEVVKTLCALLDELCPESPHRPHAGLITYVQDRPGHDQRYAI DASKIQRELGWVPSESFESGIRKTVEWYLKNTQWVANVKSGSYQQYIDQHYRNRPVQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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