Pseudomonas fluorescens SF4c, QS95_RS18280

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain SF4c contig_13, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCGGACAGCCGTCCGCGGTTGGCCTTGATCAGGTCGAACTGCCCGGAGCCGTCCTTGTCGGCTTCATTGCCATGGGTGCCGAAACTCAAGGGCACGGTGA TATGGCTGTCGAACGACAGGATCCGTTCCTGCAGTTCGGTGGCCTGTTTCATCACCTTGACCGGGTAGCCGGGGTTGTCCCTGAACCAGTAATCCCAGGC CAGGAAGCCTGCACCGGCGCTGATCGCCAAGGCCAGCGGCAGGCCGATGTATAGAGCCTTTTTCGAACGCGGTTTTGTCATTGCCATCTCATTCAGGTTC GCCGTCGAGGTACAGGCGCAGGGGCCTTTGCTATCTGGGAGGAACGACTGGGGAGGCAAACAATTTAGCGAGGCGGCAAAAGAACGCGCGAACGCGGTCC GGACCTTCGGAGGATCTTTTCGGGCAGGCGATAAATTTGTCGCACCAGCAAACGTTCTAGCTTGGATAAAGCCTGCTTCATGGCTGACACAGGTAGGGCA
DNA Sequence for Gene
>QS95_RS18280
ATGACGATCTCTCGACGCTGGTTCATGGCGGGCATGGCACTCACGGGCGCTGCGCTGCCTGCCGCTTTTTATGCACATCGTGAGCTGACCCGCGAGGACG AGCCGATCACGCCGGGCGAGGCCACGGTGGATCTGGCAGACACTGCCGGCCAGCAGTTGGCCGACAACCTGCGCGGTGTCTGGGACATCCGCTTCACGGG CGCCGATGCCGGGCTCGACGGCCTGCCCCGTGAGGGCCTGGAATTGTTTCTCGATATTGCCCAGCGCGGGCGCGGCTTGCGCGGCTGTCTCGACACCGGC GCGCGGTTGCGGAGCGACGGGTTGCCCCGCTATGACGTCATTGGCGATCTGGTCTCGGGTAATGGCGCGCAGCTGTACTGGCGTCTGATGCGCACGGACC AGCCACAGGCGCCGGCGGTCTACGAGCTCGATGTCAAACTGGACGAAGTCTGGGCGGCCTTCGGCAATGCCGGCAGCGGCACGTTCACCGGGCAGGTGCT GCGCCTGGATCGGCCGTTGGGTCTGCCGGAGCTCGATAACCGTTTCATCGCCGTCAAACGCCGTTTCCCCGAGGCTCGTGAGCGAACCGGTCTGAACCCG ACGTTGCTGGCGTGGCTGGTGTCGCCCGAGCATCGCCTGTTTCACCAGCTCTGGCATGCCTCGCGGGACAAGTGGCACAAACTGTCCGAGAAAAAACGCG ATGCGTTGCGCGGCATCGGCTGGCAACCCGGCCCGCGTTACAAGGAGCGCGATGCGCGCGGTCCGCGCAAGGATCGCAACGGCTCGGGCATCGACTTCTT CTTCATGCACCGGCACATGCTGGGCACTGCACGTTCGATGCAGGACTTGCCGTCCTGGTTGAAATTCCCCGCGCCGCAACCGGAGCTCGAGCGCGATCGT CAGGGTTTTGCCCGCTACTTCGACAACCATGACGGCGACGCCTTGCCACCCACCTGGCTGACCGAAGGCGATGACGAATACACAAAGTGGGTCAGCGACA TCAAGTCGGCCGAGACCTACCACAGCAACTTCCAGGTCTGGGAATCGCAGTACACCGATCCGCGCTATCTCTCGAAGCTGACGCTCGGCCAGTTCGGCTC GGAAGTCGAGCTGGGTCTGCACGACTGGCTGCACATGCGCTGGGCATCGGTGGCCCGTGATCCGTCCAACGATATTCCGGTGCCGATGGCCCGGGATCAG GCTGACTTCGCGGCGCGCTGGTACGCGCCGGAGAACGACTTTCTCGGCGACCCGTTTTCCTCCCATGTGAACCCGGTGTTCTGGCGATTCCATGGCTGGA TCGACGACCGCATTGAAGACTGGTATCGCGCTCACGAACGCTTTCATCCAGGTGAAGTGAGCCGCCTGCAAGTCAATGGCGTCCAATGGTTTGCACCGGG GCGCTGGGTCGAGGTCGATGATCCGTGGCTCGGCCCGGACACCCATGGTTGCAGCACCGTTCCGGGCCTTCAGGTGGGGCGCTCGGTGGAGATGGACCCG GAAACCATGAAGCTGGCACTGCGCATCACGTTCGGCGATGAAGACAACATGGCCGACCTGTTTCGCAAAGTGCCGCAGCGGCCGTGGTACGCCAGGCACC TGAAGGTCAAGGGTCGGCAGCTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGGCAAAAAAATCGCAGCGTCGGGCTGCGATTTTTTTTGCCTTGAACAAGGCGCTGTTCAGATGACTTGCCAACCCCCGCCCAGCGCCTTGTACAGCGCA ATGCTGGCCTGCAGGCGTGACAGCCGCAGTTGCACGTTCATGTCCTGGGCGGCATACAGCGTGCGTTGAGTCTGCAACACCGTCAGCAGATCCTCGGCTC CTGCCTGATAGCGGCTCTGGGCGATGTCGAACGCGGTCTGTGCCTGGCGCAGTTCCTCGCCTTGCCATTGACGCTGTTCATCGAGGCCGCGAATGCTCGT CAGGGCTTTTTCCACGTCCGCGAAGCCATTGATGATTGCGCCGCGATAGGTCTCCAGCAATTCTTCCTGGCGCGCCGTGGCCTTGTCGCGTTCGGCACGC AGGCGGCCATTGTTGAAGATCGGTGCCACCAGACCTGAGGACAGGTTGTAGAAGGTTGTGCGCAGCAGATCCGATGCGAGGTCCGCGCCGGTGCCGAGGC
Amino Acid Sequence
>PvdJ/PvdD/PvdP-like protein
MTISRRWFMAGMALTGAALPAAFYAHRELTREDEPITPGEATVDLADTAGQQLADNLRGVWDIRFTGADAGLDGLPREGLELFLDIAQRGRGLRGCLDTG ARLRSDGLPRYDVIGDLVSGNGAQLYWRLMRTDQPQAPAVYELDVKLDEVWAAFGNAGSGTFTGQVLRLDRPLGLPELDNRFIAVKRRFPEARERTGLNP TLLAWLVSPEHRLFHQLWHASRDKWHKLSEKKRDALRGIGWQPGPRYKERDARGPRKDRNGSGIDFFFMHRHMLGTARSMQDLPSWLKFPAPQPELERDR QGFARYFDNHDGDALPPTWLTEGDDEYTKWVSDIKSAETYHSNFQVWESQYTDPRYLSKLTLGQFGSEVELGLHDWLHMRWASVARDPSNDIPVPMARDQ ADFAARWYAPENDFLGDPFSSHVNPVFWRFHGWIDDRIEDWYRAHERFHPGEVSRLQVNGVQWFAPGRWVEVDDPWLGPDTHGCSTVPGLQVGRSVEMDP ETMKLALRITFGDEDNMADLFRKVPQRPWYARHLKVKGRQL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site