Pseudomonas fluorescens SF4c, QS95_RS17225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF4c contig_13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACACGCCGCAGCTGAGTCTCGCCCCGCATGCGCATCAAGTGGGGTTGATCGTGTTGCGCTCGTTCGGCAAGTTTTTCGGTCTGGCCGGTGTGCGGCTGG GGTTCGTGCTGGCCGAGCGCAAGTTGCTCCGGTTGCTGGCCGAACAGGTCGGGCCCTGGGCAGTCAGCGGGCCGACCCGGGTGCTGGGTCAGGCCTGTCT GCGCGACACCGAAGGCCACACGCGTCAGCGCATCCGCAGCGACGAGGCCAGCGAACGATTGGCTGCGCTGCTTGAGCGCCACGGCTTCAAGCCGCAGGGT GGCTGTGCGCTGTTTCAGTGGCTGATCACCGAACAGGCCGCCGCGCTGCACGAATTCATGGCCCGACGCGGCATTCTCCTGCGTCTGTTCGCGCACAACA GCAGCCTGCGATTCGGCCTGCCCGCCGATGCCGCCGACGAGGCGCGTCTTGAGCAAGCCCTGCAAGCATTCGCCAAGCATTGCTCCATGGAAAAACCAGC
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| DNA Sequence for Gene |
>QS95_RS17225
ATGACCACATTAATGGTGCAGGGCACCACCTCCGACGCCGGCAAAAGCACGCTGGTGACGGCGCTCTGCCGCTGGGCCACCCGTCAGGGCGTTGCCGTGG TGCCGTTCAAGCCGCAGAACATGGCGCTCAACAGTGCGGTGACTGCCGACGGCGGCGAGATCGGCCGCGCGCAAGCGGTGCAGGCCCAGGCGGCGTTTCT CGAGCCGCACACTGACATGAACCCGGTGCTGCTCAAGCCCAACAGCGACACCGGCGCCCAGGTCATCATCCACGGTCGTGCGGTCACCAGCATGAACGCC GTCGCCTATCACGACTACAAAGCCATCGCCATGCAGGCCGTGCTCGCTTCCCACGAACGTTTGAGTGCCGCCTATCCGCTGGTGATGGTCGAAGGCGCGG GCTCGCCGGCCGAGATCAATCTGCGCGCCGGCGACATCGCCAACATGGGCTTCGCCGAGGCGGTGGATTGCCCGGTGCTTTTGATCGCCGACATCAATCG TGGCGGCGTCTTCGCTCATCTGGTGGGCACGCTGGAACTGCTGTCGCCGAGCGAACAGGCACGGGTCAAAGGCTTCATCATCAACCGTTTTCGCGGCGAC ATCGCCTTGCTGCAACCGGGCCTCGACTGGCTGGAACAGCGCACCGGCAAACCGGTGGTGGGCGTGCTGCCGTACGTGATGGATCTGCATCTGGAAGCCG AGGACGGCATTGACCAGCGTCAGACCGACAAGGCGGAGCAAGTCCTGAAAGTGGTGGTACCGGTGCTGCCGCGCATCAGCAACCACACCGATTTCGATCC GTTGCGTCTGCATCCACAAGTTGATCTGCAATTCATCGGCCCGGGGCAAGCGATTCCCCCGGCTGATCTGATCATCCTGCCGGGCTCGAAAAGTGTGCGC AGTGACTTGGCGTATCTGCGCGCCAATGGCTGGGAAACCGCCATTCGCCGTCACCTGCGTTACGGCGGCAAGCTGCTGGGGATCTGCGGCGGTCTGCAAA TGCTCGGCGAGCAGGTGCACGATCCGCTGGGCCTGGAAGGCGCACCGGGCTCCAGTGCCGGTCTGGGTTTGCTTGGGTTCGAAACACAGCTCGAAGCCGA GAAGCAGTTGCGCAATGTGCGCGGGCGTCTGGCGCTGGAAGATGCCGAGGTCAGCGGTTATGAAATCCATGCCGGCGTGACCACGGGACCTGCGCTGGAA AATGCTGCCGTGCATCTGGACGACGGTCGCTGTGACGGCGCGCAAAGTCTCGACGGGCAGATTTTCGGCACCTACCTGCATGGCCTGTTCGAATCGCCGG CGGCCAGTGCCGCGCTGTTGCGCTGGGCCGGTCTGAACAATGTGCAGGAGGTGGATTACCACGGCTTGCGCGAACGCGATATCGAACGGCTGGCGGATCT GGTGGAGAAGCACCTGGATACCGGGCTGTTACGTGAACTCTGTGGAATCTCCCCATGCTCCAGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCTCGGCGGCGCCCGCTCCGGCAAAAGTCGTCTGGCCGAAAAACTCGCCACCGACAGCGCACTGGCCGTCACTTACATCGCCACCAGCCAACCGCTGGA TGGCGAGATGAATGAGCGTGTCGCCCATCATCGCGCCCGTCGTCCCGTCGAGTGGGCGTTGATCGAAGAACCGCTGGAACTGGCCCGTGTCCTGCGCGAA ACCGCCAGTGCCGAGCGTTGCCTGCTGGTGGATTGCCTGACGCTGTGGCTGACCAATCTGCTGATGCTCGAAGACGCCGAACGCCTCGCCGCCGAACGCG AGGCCCTGCTCGAATGCCTGGCGTCACTGCCGGGTGAAATCATTTTTGTCAGCAACGAAACCGGAATGGGTGTCGTGCCGCTGGGCGAATTGACTCGCCG CTACGTCGATGAAGCCGGTTGGCTGCATCAAGCTCTGGCCGAGCGTTGTCAGCGAGTTGTCCTGACGGTCGCCGGCCTGCCCCTGACTTTGAAAGGACCT
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| Amino Acid Sequence |
>cobyric acid synthase
MTTLMVQGTTSDAGKSTLVTALCRWATRQGVAVVPFKPQNMALNSAVTADGGEIGRAQAVQAQAAFLEPHTDMNPVLLKPNSDTGAQVIIHGRAVTSMNA VAYHDYKAIAMQAVLASHERLSAAYPLVMVEGAGSPAEINLRAGDIANMGFAEAVDCPVLLIADINRGGVFAHLVGTLELLSPSEQARVKGFIINRFRGD IALLQPGLDWLEQRTGKPVVGVLPYVMDLHLEAEDGIDQRQTDKAEQVLKVVVPVLPRISNHTDFDPLRLHPQVDLQFIGPGQAIPPADLIILPGSKSVR SDLAYLRANGWETAIRRHLRYGGKLLGICGGLQMLGEQVHDPLGLEGAPGSSAGLGLLGFETQLEAEKQLRNVRGRLALEDAEVSGYEIHAGVTTGPALE NAAVHLDDGRCDGAQSLDGQIFGTYLHGLFESPAASAALLRWAGLNNVQEVDYHGLRERDIERLADLVEKHLDTGLLRELCGISPCSS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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