Pseudomonas fluorescens SF4c, QS95_RS12125
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF4c contig_10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCATGGCGTTACCACGCTGATGAATGCAAAAAAGGCTGCGATCCCATAAGGTCGCAGCCTTTTTTGATGTTTTATCCGTCAGTCTTCTTTGCGCACCGT GGCCACTTCGTCGGCACGTACGCGGACTTTGGCGCCGGAAATATCCTTGAACTCGTAGAAACCATCCTCGGTTTTGGTATCGGGCATGTCTTCGGTCAGA TATTGGGTGCCGTTCTGCAGGGTAACCACCGTCGGGGTCGAGCAACCGGCCAGGGTCAGCAGGGCCGCAACAGCCAACGGGATCCCGAGAGTCTTGATTT TCATAAGCAGCATTCCTGTTCATTTCGACCATTGTCGGCCTCTAACGCGGTTGGTGCCATTACGCCGGGAAAAGTTCGATGGCCACCTGAAAAAATCTGC AATGAAGGTGCCACTGATCTTTTTCCGTTTGCGCCTGCCGGGGCAGACTGGTATCTGTACGCATAACCAGTACTCGCTTGCCATGGCCCCCGAATCTACC
|
|
| DNA Sequence for Gene |
>QS95_RS12125
GTGACTGCCAATCCCCTCGACGATCCGTTCTATTACCTCAACAACTTCCGCCAGGTGCTTGATTGGCTTGAGCTTCGCTATGCCGATGTCATGAGCGAAA CGGAACATGCCTTCATTCGCGAGTTCAAGGCGCTGCCGCGTCCGTCCCAGGGCCTGCTGGTGCGTATGGTGATGCGCAAGGGCGTGCATTTTCGCGCCGG CAAGCTGAATTATCCGGAAATCGGCGACATCGCCGAGGCGGCGCAACCGCTGTTGGAGCATGGCTGGCTCGATGAACAGGCGCCGTTGTCGATGGCGGAA CTGTTCGAGGTGTTGCTCAAGGCCGAGATCCTGCAAGCCTTCGGCCCGGCCATCGACCAGCCCCGAGGCAAGAAAGTCGACTGGTTGCCGCAGCTGCACG AACAATTCCCCGAGCCCCGCAGTTTCGTGCAATGGTGCCCGGCGCTGGCGGATCGGCTGTTCAGCCTGACGCTGATGGACCTGTGCGACCGTTTTCGCCT GATGTTCTTCGGCAATCTCTATCAGGACTGGTCGGAATTCGTGCTCGCCGATCTTGGCATCTTCACTTATGAAAAAGTCGAATTCTGCGCCGATTCCCGG GGCTTGCGCAGCCGTGCCGACGTCGATGCCTGCCTGTTTCTGCACGATTGCCAGCTGTATTTCGAAGCCGGCGAGCCGCTGGAACCGATCGTCGAACAAG TCGCGGCGCTGCATTTCGATAACCCGTGGCTGCAACGCCGGCGCGGCAAGCTGTTGTTCCAGATCGGCCAATACTGCGAGCGCCTCGGCGAATTCGCCCT GGCGCTGAAGATCTATCGCGACTGCGCCTATCCCGGCGCGCGATTGCGGATGATCCGCGTGCTGGAGCGCAGCGCCGAATATGCGTTGGCTCTCGAACTG GCGGTCATTGCCGAGCAGGCGCCGGAAACCGCCACAGAACAACAGGGCCTGCAACGGCTGGTGCCGCGTTTGCGGCGCAAGCTCGGCGGCCCACCGATCA AGCGCACGGCGCCCGGCATGGTGGAACGGCTGGACCTGCATCTGCCGCGTCTCGATCCGGCGTTGTCGGTGGAATATCACGTTCAGGCGCACCTGCATGA AGAAGCAGGCCCGGTGCATTACGTGGAAAACAGCCTGATCAACTCACTGTTCGGCCTGCTGTGCTGGCCGGCGATCTTCGCGCCGCTGCCGGGCGCGTTC TTTCACCCGTTCCAGCGCGGGCCGGTGGATCTGCTCAATGAAGACTTCCAGCCCCGACGCGCCGAGCTGTTTCAGGCCTGTCTGGCCGAACTCGACGATG GCCGCTATGCCGACACCATCCGCGCGCGGTTCGCCGCCAAATGGGGCGTGCAGTCGCCGTTCGTGTTCTGGGGCGCGCTCAATGAAGAACTGCTGGAGCA GGCTTTGGCCTGCCTGCCGGCCGAACACCTCAAGCACTGGTTCAGCCGTCTGCTGCTGGACATCAAGGCCAATCGCGCCGGCATGCCCGACCTGATCCAG TTCTGGCCGCAGCACAGGACCTACCGGATGATCGAAGTCAAAGGCCCGGGCGATCGGCTGCAAGACAATCAATTGCGCTGGCTGGAGTTCTGCCACGCGC ACCGGATGCCGGTCGCCGTGTGTTACGTGCAATGGGCGGAGCAGGGCGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTACAGCATCGCCGTGCGGGCACTGTGCGAATTCACCGCGAAAACCGGTGACCTCGACTTGCGCTTCACCCCGTCACCGACCGCGCTGGAGGGGATTGC CGGGCATCGCACCGTGGCGTCCCGGCGCAACGACGCCTACCAGAGCGAAGTGGCGCTGGAGGGCGCATTCGGGCCATTGAAGGTCAAGGGCAGGGCGGAC GGCTACGACCCGACGCAGAACTGCCTGGAAGAGGTCAAAACCTACCGTGGCGACCTGGGCAAGCAACCGGCCAATCACCGTTCGTTGCATTGGGCCCAGG CGAAGATTTACGGCTGGTTGATGTGCTGCCGATTGCAGCTTGAGCAGATCAATCTGGCGCTGGTGTATTTCGACATCGTCACGGAAAAGGAAACCTGCCT GGTCGAGGCGTTCAGCGCTGATGCGCTGCGACAGTTCTTCGAACAGCAGTGCGGTTTGTTCCTCGCGTGGGCCGAACAGGAAATGGCCCACCGCGAAGCG
|
|
| Amino Acid Sequence |
>nuclease
MTANPLDDPFYYLNNFRQVLDWLELRYADVMSETEHAFIREFKALPRPSQGLLVRMVMRKGVHFRAGKLNYPEIGDIAEAAQPLLEHGWLDEQAPLSMAE LFEVLLKAEILQAFGPAIDQPRGKKVDWLPQLHEQFPEPRSFVQWCPALADRLFSLTLMDLCDRFRLMFFGNLYQDWSEFVLADLGIFTYEKVEFCADSR GLRSRADVDACLFLHDCQLYFEAGEPLEPIVEQVAALHFDNPWLQRRRGKLLFQIGQYCERLGEFALALKIYRDCAYPGARLRMIRVLERSAEYALALEL AVIAEQAPETATEQQGLQRLVPRLRRKLGGPPIKRTAPGMVERLDLHLPRLDPALSVEYHVQAHLHEEAGPVHYVENSLINSLFGLLCWPAIFAPLPGAF FHPFQRGPVDLLNEDFQPRRAELFQACLAELDDGRYADTIRARFAAKWGVQSPFVFWGALNEELLEQALACLPAEHLKHWFSRLLLDIKANRAGMPDLIQ FWPQHRTYRMIEVKGPGDRLQDNQLRWLEFCHAHRMPVAVCYVQWAEQGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|