Pseudomonas fluorescens SF39a, NX10_RS07900
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGACGCCCTGCTGGCCGGTGAAGAAGCCAAGGCCAAGAAGCCGACTGACTGGGTCATCACCGGCACGCCGCAGTCTTTCGAAGCCTATGCCTGCATGGT TCGCAAAGGCGACGCGCCGTTCAAGAAGGCGGTCGATGACGCCATTGTCGGCCTGTACAAGTCGGGCGAGATCAACAAGATCTACGCCAAGTGGTTCGAA AGCCCGATCCCGCCAAAAGGCCTGAACCTGAACTTCCCGATGAGCGACAAGGTGAAGGAGCTGATCGCCAATCCAAGCGACAAGCCGGCGCCTGACGTAA AAATCTGATTCCTGACTAACCTTATCGTCTGAGGGAGCGACCTCCCTCAGACGTCTGTTAATGCCTGCTGGCTTTGCTGTGGAACACTCGACCTGGCGGT TTTCGAGCCGATCGCGTGTGTCCGGCGTTCCGCGTCGGACGGGAAAGGAACTTCCCCAAGCGGGTGCTTGTACATCGATCGATTTCGAGGGGAGACCCTA
|
|
| DNA Sequence for Gene |
>NX10_RS07900
ATGAATTACAACTGGGACTGGGGCGTGTTCTTCAAGTCCACTGGCGTTGGCAGCGAGACCTATCTCGACTGGTACATCGCCGGCCTGGGCTGGACCATCG GCATCGCTGTCGTGGCGTGGATCATCGCTTTGCTGCTGGGCTCCATTCTGGGGGTCATGCGCACTGTGCCAAACCGCATCGTAGCCGGCATCGCCACCTG CTACGTGGAACTGTTTCGCAACGTGCCGCTGCTGGTTCAGCTGTTCATCTGGTACTTCCTGGTACCCGACCTGCTGCCGCAGAACCTGCAGGACTGGTAC AAGCAAGACCTCAACCCGACCACCTCGGCATACCTGAGCGTCGTCGTGTGCCTGGGTCTGTTCACCGCTGCCCGTGTTTGCGAACAGGTGCGCACCGGTA TCCAGGCGCTGCCACGCGGCCAGGAATCCGCTGCCCGCGCGATGGGTTTCAAGCTGCCGCAGATCTACTGGAACGTGCTGCTGCCGCAGGCGTACCGGAT CATCATTCCGCCGCTCACCTCGGAATTCCTCAACGTCTTCAAGAACTCCTCCGTGGCGTCCCTGATCGGCTTGATGGAACTGCTGGCACAAACCAAACAG ACCGCCGAGTTCTCGGCCAACCTGTTTGAAGCCTTCACCTTGGCCACGCTGATCTACTTCACCCTGAACATGAGCCTGATGTTGCTGATGCGCATGGTCG AGAAGAAAGTCGCGGTGCCCGGCCTGATCTCCGTGGGGGGTAAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGGACTTCGATTTCAGCGGCATCATCCCCGCGATCCCGGGCCTGTGGAACGGCATGGTCATGACCTTGCAGTTGATGGTCATGGGCGTGATCGGCGGCAT CGTGCTCGGCACGATCCTGGCGCTGATGCGCCTGTCGTCAAGCAAACTGCTGTCGAACATTGCCGGCGCGTACGTCAACTATTTCCGTTCGATCCCGCTG CTGCTGGTGATCACCTGGTTCTACCTCGCGGTGCCGTTCGTGTTGCGCTGGATCACCGGCGAAGACACGCCGATCGGTGCATTCACCTCGTGCGTCGTGG CCTTCATGATGTTCGAAGCGGCGTATTTCTGTGAAATCGTCCGGGCCGGCGTGCAGTCGATTCCCAAAGGCCAGATGGCCGCCGCGCAAGCGATGGGCAT GACCTACGGCCAGACCATGCGTCTGATCATCCTGCCTCAGGCGTTCCGCAAGATGACGCCGTTGCTGCTGCAACAGAGCATCATCCTGTTCCAGGACACT
|
|
| Amino Acid Sequence |
>amino acid ABC transporter permease
MNYNWDWGVFFKSTGVGSETYLDWYIAGLGWTIGIAVVAWIIALLLGSILGVMRTVPNRIVAGIATCYVELFRNVPLLVQLFIWYFLVPDLLPQNLQDWY KQDLNPTTSAYLSVVVCLGLFTAARVCEQVRTGIQALPRGQESAARAMGFKLPQIYWNVLLPQAYRIIIPPLTSEFLNVFKNSSVASLIGLMELLAQTKQ TAEFSANLFEAFTLATLIYFTLNMSLMLLMRMVEKKVAVPGLISVGGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|