Pseudomonas fluorescens SF39a, NX10_RS07420 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGATGGCAAACAGCAGCAAGGAACCGAGGCCCATGCCGAGCTTGCCGAGAAATGCCAGCGCGATGAACAGCACGCCGAGGATCAAGCCGCGAATGCCCA GATCGATGGCAAACGCCACCGCGCGCACCATCAACCCGGCGGGGCGCAACGGCAGGTCGATGCCTTCCGGCGTTTCGACCTGATGCCGCGTATCCAGCGG TGCTTTCCTTCGCGGTGCTGTGGGCTCGAGCATGGGCTACCTGATGTTCGCCTGTCCGGGATGCAAGTGCGCCTGATGCTAGCAGCCTCTCGGGTGTGGG AGCGAGCCTGCTCGCGAATGTGGTGGGTCAGTCAGCCTGTGGGCAACTGACAGAAAGCCTTCGCGGCCAGGCTCGCTCCCACAAGGGCAATCCATTCCAG TTGTAGGAATCTGGAGAAATTGCTGTTAGAGGGCGACCAGGCTGGCCGTGGCAGCCCTGAAACGCCTAGACTTCGCCGATCTTCTGTTCAGGATTCGCCC
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| DNA Sequence for Gene |
>NX10_RS07420
|sbcB
GTGACTTCAATCTTCTGGTACGACTACGAAACCACTGGCATCAATCCGCGCAACGACCGACCTCTGCAAGTTGCCGGGATTCGCACCGACCATGCGCTCA ACGAGATCGACGAGCCGGTCAACCTCTATTGCCAACCCAGCGAGGACATCCTGCCGCACCCGGCGGCGTGCGCGATCACCGGCATCACCCCCGGCCAGCT CGCTGAAAAAGGCCTGAGCGAAGCCGATTTCATGACTCGCGTGCATGCGCAACTGGCCGCACCGGGTACCTGCGGCGCCGGTTACAACACCTTGCGTTTC GACGATGAGATGACCCGCTACAGCCTCTATCGCAACTTCTTCGACCCCTACGCCCGTGAATGGCAGGGTGGCAACAGTCGCTGGGATCTGATTGATGTGG TGCGCGCCGCTTACGCGTTGCGCCCGGAGGGTCTGGTCTGGCCGACCGATGACACGGGCCGGGTGTCCCTCAAGCTTGAACGCCTCACGGCGGCCAACAA TATCGATCACGGCCATGCCCACGAGGCACTGTCGGATGTGCGCGCTACGATTGCGTTGGCGCGGCTGATTCGCGAGAAACAACCCAAACTCTACGAGTGG CTGTTCCAGCTGCGCAGCAAGCAAAAGGTCATGGATCAGATCCGCCTGTTGCAGCCAGTGGTGCATGTGTCGGGGCGTTTCTCGGCGGCGCGCAGTTATG TCGGCGTGGTCCTGCCGCTGGCCTGGCACCCGAAGAACCGCAACGCCTTGATCGTCTGTGACTTGCATCTCGATCCGCAGGGGCTGCTGGAGCTCGACGC GCAAACTCTGCGCCAGCGCTTGTACACCCGCCGCGATGAGTTGGCCGAAGGTGAACTGCCGGTGCCGCTCAAGCTCATTCACATCAATCGTTGCCCGGTG GTAGCGCCGCTGAAGGTATTGCGCGCAGAAGATCAGCAACGCCTTGGGCTGGATATGGCGCTTTATGATGAACGGGTCATGCGACTAACTGACGCACAAC AAGTCTGGAAAGATAAAATCGCAGCGATTTATACCAGCGAAGATTTCACTCCCAGCGAAGATCCCGAGCAACAGTTGTACGACGGATTTATCGGTGATCG TGATCGGCGTCTATGCGAACAAGTTCGAGCGGCTGATCCTGCGCAATTGGCGCAAGAGGCATGGCCTTTCGATGATGAACGTTTGCCTGAATTACTTTTT CGATATCGAGCACGCAACTTTCCAGACACCCTGGATGTGGCGGAACAAGAGCGCTGGAGATTGTTTTGTCAGCAGCGTCTTACGCAACCCGAGGCCGGCG CGCCGAATACCGTGCAGTCTTTTACAGAAGCGGCCGAGCAATGGTCGCTTAGTGCGACGCCCCTGCAGCGCGAGGTACTCAATGACTGGCAGAACTATGT CCAGGCATTACGCAAACGTTTGAATCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCGAACATACCCGGAATTAATTTGCGGGCATAAAAAAACGCCAGCTCAAGCTGGCGTTTTTTTGTTCGCGGATCGCTCGGCGAAAGCGTCGCGGCTTA GCCCAGCAGGGTCGCCCAGCCTTCAACCACGTCACCGCCCCACTTGGCTTTCCACTCTTTCAGAGTCTTGTGGTTGCCACCTTTGGTTTCGATGACTTCA CCGTTGTGCGGGTTTTTGTATTGCTTAACTTTGCGTGCACGCTTGGTGCCGGTAGTTTTCACTGCGCCGCCACGTGGCGCCTTGGATTTGGCTTCCGGAT CCAGCAGCGCGATGATGTCACGCAGCGACTTGGAGTATTCACCCATCAGCGTGCGCAGTTTGCCTTCGAATTCCAGTTCGGCTTGCAGTTTGTCGTCTTC GGACAGGTTCTTCAGACGGGCTTGCAGCTCTTTGATGGCTTCTTCGGTGGCGCGATATTCGTTGATCAAGGACATGAGTACTACCTTTTGTAGAATGCTG
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| Amino Acid Sequence |
>exonuclease I
MTSIFWYDYETTGINPRNDRPLQVAGIRTDHALNEIDEPVNLYCQPSEDILPHPAACAITGITPGQLAEKGLSEADFMTRVHAQLAAPGTCGAGYNTLRF DDEMTRYSLYRNFFDPYAREWQGGNSRWDLIDVVRAAYALRPEGLVWPTDDTGRVSLKLERLTAANNIDHGHAHEALSDVRATIALARLIREKQPKLYEW LFQLRSKQKVMDQIRLLQPVVHVSGRFSAARSYVGVVLPLAWHPKNRNALIVCDLHLDPQGLLELDAQTLRQRLYTRRDELAEGELPVPLKLIHINRCPV VAPLKVLRAEDQQRLGLDMALYDERVMRLTDAQQVWKDKIAAIYTSEDFTPSEDPEQQLYDGFIGDRDRRLCEQVRAADPAQLAQEAWPFDDERLPELLF RYRARNFPDTLDVAEQERWRLFCQQRLTQPEAGAPNTVQSFTEAAEQWSLSATPLQREVLNDWQNYVQALRKRLNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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