Pseudomonas fluorescens SF39a, NX10_RS23255
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_22, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCTCTGGCCTGCTCATCCACCGCTTCGGCCAATTGCCGCCAGGAGTAACGCGACTGCTGATGGCGCACCACCAGCGCCTCGCCGTCCGGGTGTTGTGCG ACAGTCTGATCGAAGCGCTGACCTATGGTCATCGCCAGCAAAGCCTTGTCCTGAGAGCCACGGCTGTAGCTACGCTGCGGGTTTGCGGTGGGTTGATCCA TGACGACCCTATTGTCTTTATTAGTGGGTTTTCCCGGTTTTGAATCCCTGTGGGAGCGAGCCTGCTCGCGAATACGCTGCGTCTTTCACCCTTTAGGGCG ACTGATACAGCGCTTTCGCGAGCAGGCTCGCTCCCACCAGAAACAAACCGATATCTGATCCTGAACTGCCCTTACTCTCGCCCAAGTTGACGCTTACGTA AAGCCGATTGACAGTCGGTCTCTGGAAGCTTTACGTTAACGTAAAGCTGAGCGCCGACTCGTCGTGCGCTGCACCCGATAAAAAAGCCAAAAGGTGACCC
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| DNA Sequence for Gene |
>NX10_RS23255
ATGAGCTATCCATCCCTGAATTTCGCCCTCGGTGAAACCATCGACATGCTGCGCGATCAGGTGCAGTCTTTCGTCGCCGATCAGATCGCCCCGCGTGCCG CGCAGATCGACCACGACAACCTGTTCCCCGCCGACATGTGGCGCAAATTCGGTGACATGGGCCTGCTCGGCATCACTGTGCCGGAAGAATACGGCGGCGC CGGTCTGGGTTATCTGGCGCATGTGGTGGCGATGGAAGAAATCAGCCGTGGCTCGGCGTCGGTGGCGTTGTCCTATGGCGCGCACTCCAACCTTTGCGTC AACCAGATCAACCGCAACGGCAATCACGAACAGAAAAGCAAATACCTGCCGAAACTGATCAGCGGCGAGCACGTTGGCGCCTTGGCGATGAGCGAGCCTA ACGCCGGTTCCGACGTGGTTTCGATGAAACTGCGCGCCGACAAACGCGGCGACCGCTTCGTCCTCAACGGCAGCAAAACCTGGATCACCAACGGCCCCGA CGCCAACACCTACGTGATCTACGCCAAGACTGACCTGGAAAAAGGCCCGCACGGCATCACTGCATTCATCGTCGAGCGCGACTGGAAAGGCTTCAGCCGC AGCAACAAGTTCGACAAGCTCGGCATGCGCGGCTCCAACACCTGCGAGCTGTTTTTTGATGACGTCGAAGTGCCGGAAGAAAACATTCTCGGTGTGCTCA ACGGCGGCGTGAAAGTGCTGATGAGCGGCCTCGATTACGAGCGCGTGGTGCTCTCGGGCGGCCCGACCGGAATCATGCAGTCGTGCATGGACCTGATCGT GCCGTACATCCACGACCGCAAGCAGTTCGGCCAGAGCATCGGCGAGTTCCAGCTGATCCAGGGCAAAGTCGCCGACATGTATACCCAGCTCAACGCCAGC CGCGCTTATCTGTACGCGGTGGCCCAGGCCTGCGAGCGCGGCGAAACCACGCGCAAGGACGCGGCCGGGGTGATTCTCTACACCGCCGAGCGCGCCACGC AAATGGCCCTCGACGCGATCCAGATTCTCGGCGGCAATGGCTACATCAACGAATTCCCCGCCGGCCGCCTGCTGCGCGACGCCAAGCTCTACGAAATCGG TGCCGGCACCAGCGAGATCCGGCGCATGCTGATCGGCCGTGAACTGTTCAACGAGACGAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATTTCGGCAGCTGCAAGCCGCAAGCTTCAAGCTGCAAGAGAACCGCGCTCTTGCCCCGACTTGCCGCTTGTAGCTAGAAGCTGCTTACGGAGTAAGCCCC ATGATTCTGCACACTCAGCTCAACCCGCGTTCAGCGGAGTTCGCCGCCAACAGCGCGGCGATGCTCAAACAGGTCGACGCGCTGCACACCCTCCTCGCTC AGGTGGTGCAGGGTGGCGGTGTCAAAGCTCAGGAACGCCACACCTCGCGGGGTAAATTGCTGCCGCGCGAGCGCATCAATCGCTTGCTCGATCCGGGCTC GCCGTTTCTCGAAATCAGCCAACTGGCGGCTCACGCCGTGTATGGCGAAGACGTGCCGGCTGCCGGGGTGATCGCCGGCATCGGCCGCGTCGAAGGTGTG GAGTGCATGATCGTCGCCAACGATGCGACGGTGAAAGGTGGTTCGTATTACCCGCTCACCGTGAAAAAACACCTGCGCGCGCAGACCATTGCGCAGCAAA
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPSLNFALGETIDMLRDQVQSFVADQIAPRAAQIDHDNLFPADMWRKFGDMGLLGITVPEEYGGAGLGYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGNHEQKSKYLPKLISGEHVGALAMSEPNAGSDVVSMKLRADKRGDRFVLNGSKTWITNGPDANTYVIYAKTDLEKGPHGITAFIVERDWKGFSR SNKFDKLGMRGSNTCELFFDDVEVPEENILGVLNGGVKVLMSGLDYERVVLSGGPTGIMQSCMDLIVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAQACERGETTRKDAAGVILYTAERATQMALDAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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