Pseudomonas fluorescens SF39a, NX10_RS21610
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_21, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGATCCAAACGTACCGGGCCGGACCTGGCCCGCGTGGGCGGTCGTTACTCCGATGACTGGCAACGTGCGCACTTGTACAACCCGCGCAACGTGGTCCCC GAGTCGAAAATGCCGGCTTACCCGTTCCTCGTGGAAAACAAGCTCGACGGCAAGGAAACCGCGAAAAAAATGGAAGTCTTGCGCACCCTCGGCGTGCCGT ACACCGACGAAGACATCGCCGGTGCACAGGATGCCGTGAAGGGCAAAACCGAAATGGACGCGCTGGTGGCCTATCTGCAAGGCCTGGGCACCATCATCAA AAGCAAACGGTGAATCTGATGGATATCGGGATGATTCGAGGCCTGGGCACCGTGGTCGTGATGGTGGCCTTCATTGGTCTGGCCTTGTGGGTGTTCAGCC CCAAGCGCAAGTCGGAATTCGACGACGCGACCATGCTGCCTTTTGCCGATGATCCCGAAGCCATCAAGCACGTCGAGCAAGCTTCTAGGAGTAACAAAGA
|
|
| DNA Sequence for Gene |
>NX10_RS21610
ATGACTACATTCTGGAGTCTGTACGTCACAGTCCTCAGTCTCGGTACGATCTTCGCCCTGACCTGGCTGCTGCTGTCGACCCGCAAGGGCCAGCGCAGCG AACAGACGGACGAGACGGTCGGCCACTCCTTCGACGGGATCGAGGAGTACGACAACCCACTGCCGAAATGGTGGTTCATGCTGTTCGTCGGCACCATCGT GTTCGCCCTGGGTTACCTGGTGCTGTACCCGGGTCTGGGCAACTGGAAAGGTCTGCTGCCGGGCTACAACTATCTGGATACCGAGAAGCAGACCGCGTTC GCCAACGGCCAGACCGGCTGGACCGGCGTCCACGAGTGGGAAAAGGAAATGGCCCGTTCCGACGCTCGCTTCGGTCCGATTTTCGCCAAGTTCGCGGCGA TGCCGATCGAAGAAGTCGCCAAGGATCCGCAAGCACTGAAGATGGGTGGCCGTCTGTTCGCGTCCAACTGCTCGGTGTGCCACGGTTCCGACGCCAAGGG TGCCTATGGCTTCCCCAACCTGACCGACGCCGACTGGCGCTGGGGCGGCGAGCCGGAAACCATCAAGACCACCATCATGGGCGGCCGCCACGCGGTGATG CCGGCGTGGGCTGAAGTGATCGGTGAGCAAGGCGTGGCTGACGTAGCCGCCTTCGTGGTGACCAATCTCGACGGGCGCAAGCTGCCGGAAGGCGCCAAGG CCGACCCGGCCAACGGCCAGAAACTCTTCGCCGCCAACTGCGTGGCTTGCCACGGCCCTGCCGGCAAAGGAACGCCGGCCATGGGCGCGCCTGACCTGAC CCATCCGGGCGCGTTCATCTACGGCTCGAGCTTCGCGCAACTGCAGCAGACCATCCGCTACGGCCGTCAGGGCCAGATGCCGGCGCAGGAACAACTGCAG GGCAACGACAAGGTGCACCTGCTGGCGGCGTATGTTTACAGCTTGTCACATGGTGAAAAAGCAGCGGAAGCGCAGGCCGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCCAGCGCTTGAAGCGTAAAAGGCCCCGCCAATGAGATTGGCGGGGCCTTTTTCATGCCGGCATTCATGATTCGAAACGTTTGTTCAATGGACCTGAGC TGCGATGCCCGGTAGGTTTTTTCGGCCCCGATAAGCCATATCGGGTCCACTTCAAGGATGAAGCCCTAATGTCGAAAAATGATCAACGCACGCAGCAGAA TCAGCCTCACACCAGCTCTGCCCACAGGGCAAGGTTCGAACGAACCTCTGCCAAACCGTTACCTAAGGTTTCGCAGCAGACCATGAACAGCCCCGGTAAC GGTGGCGGACTTGACGGCCTCGGCGGCGGACGACTGCTCTGACAAGGGCGAACCCGAGCGCACCGTCATCACGCCTCGCAGCGTGGATCTTTGCTGATGT TTCTACTGGATACCCATGTAGTTTCCGAGCGGCGAAAAATTGCCGACTTCCAGGCCAGCGGCGTCCCTCTGATCAACCCATGGATCGCCGCGAATAACTG
|
|
| Amino Acid Sequence |
>cytochrome Cbb3
MTTFWSLYVTVLSLGTIFALTWLLLSTRKGQRSEQTDETVGHSFDGIEEYDNPLPKWWFMLFVGTIVFALGYLVLYPGLGNWKGLLPGYNYLDTEKQTAF ANGQTGWTGVHEWEKEMARSDARFGPIFAKFAAMPIEEVAKDPQALKMGGRLFASNCSVCHGSDAKGAYGFPNLTDADWRWGGEPETIKTTIMGGRHAVM PAWAEVIGEQGVADVAAFVVTNLDGRKLPEGAKADPANGQKLFAANCVACHGPAGKGTPAMGAPDLTHPGAFIYGSSFAQLQQTIRYGRQGQMPAQEQLQ GNDKVHLLAAYVYSLSHGEKAAEAQAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|