Pseudomonas fluorescens SF39a, NX10_RS21095
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_20, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGATCGTCAATCACAGCGACATCTCGGTGCGCCTCAATGCACGCAATTGCCAGGTCTGCGTGCTGCGCGGTTCGGTGCAATTGCAGCCGCTGCACGGCCC GGCGCTGGTATTGAAGCAGGGCCAGCAAGTCAGCCTGCAAGCTTCGGGCGCGGGAGCGGTGACGGCGTTCGATGCATTGATGCCGGGTTGGCGCGACGGC GTGCTGATGGCGCAAAACCAGCCGCTGGGTGATTTCCTTCGCGAGCTGAGTCGCTACCGCTCGGGTGTGTTGCGCTGGGATCCGGCGCTGGAATCGCTGC GCATCACCGGCAGTTTCCGCCTCGACGATACCGATCAAGTGCTCGCACTGCTGGCAGCCAGTTTGCCCGTCGACGTGCAAACGCGAACGCGATTTTGGGT GTCACTGGTACCGCGCGCAGAAAAAACTGGCTGAAGCCTGTCCCTTTTTTTCGCCTCGCTGGTCATTCCAGGCAAGTGAACAAATCGAGAGCTTCTTCCA
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| DNA Sequence for Gene |
>NX10_RS21095
ATGCCCGCAGTATTTCCAGGTCGTTTGCGTCCGTTGTTGCAGTTGAGCCTTTTGCTGAGCCTGAGTGCCAGCCCCGTGTTGATCCAATCGAGCTGGGCCG ACGACGGCAGCCGCCGCAGTTATCAGGTGCCGGCCGGTAGCCTGAGTGCGGCGCTGACGCGTTTCGCCGGCCTCGCCGGGGTCAATCTGTCGGTGGATCC GGCACTGGTCAGCGGCCGCAGCAGCAATGGTTTGTCCGGTGAATATGGCGTGGAGGAGGGGTTCAGCCGGTTGTTGCTGGGCTCCGGTTTGCAGCTGCAG CCGGTCGGCGATCAGGCTTATACGCTGGTGCCTGCGGCAGAAGGCAGCACCTTGCAGCTTGCGCCTACATCGATTCTTGGCGCGAGCGACTCGGCGGATG CCGACGTGTTTGCCGGCGGTCAGGTCGCACGGCGTGGCTCGCAAGGGCTGCTGGGCTCCAGGGATTTCATGGAAACCCCGTTCAGCATGACCACTTACAC CAGCGAAACGGTGAAAAACCAACAGGCGCGCACGCTGGGCGACCTGATCGGCAGCGACCCTTCGGTGCGCGCAACCAACCCGGCCGGTGGTCGCTACGAG CAATTCACCATCCGTGGTTTCAGCCTGTTCAACAGCGACGTTTCCTACAACGGCCTCTACGGAATTTTGCCGACGTACACCATCGACATGGAAATGGCTG ATCGCGTCGACATCCTCAAGGGCCCAAGCCAGTTGATCAACGGGATTTCGCCGCGGGGCAGTGTAGGAGGGGGGATCAACGTCGTGCCGAAACGCGCGAC CGACAAGCCGATTACCTCGCTGACGGCCAATTACGCCTCGAACAACCAGGTCGGCGGCGCGGTGGATGTCGGTCGGCGCTTTGGCGAAGACAATCAGTTC GGGGTGCGCTTCAACGGGGTTAAACAGTCCGGGGATACCGAATGGGATCATCAGAGTGTCGATCGCGACATGGCAGTAGTCGGTCTGGATTTCCGTGGTG AACGCTTGCGACTTTCCACCGATATCGGCCACACCGAGCGCGACACCGACGCACCGCAAGAACGCGTGCAAGTCGCCGCCAATGCCAAGGTGCCGAACGC CAATGATGTGCGCGACAACTATGCGCAACCCTGGAGCCAGGCGCGCACCAAAGACACGTTCGGCACGGTCAACGGCGAGTTCGATGTCAGCGATTCGGTC ATGCTGTATGGCGGCGTCGGCGCACGCAAAAGCAATCACGACTTCTTGCGCCATGCGGTTTCGGTGACCAACGATGCCGGTGACTTTAGCGTCCAGCCGC GAGATTTCACCCGCGACGAAAACGTTCGTACGGCTACCGCTGGGGTGCGTAACTGGTTCCAGACCGGGCCGGTCAGCCATGAGGTGAACCTGGCGGCCAA CTACTTTTATATGGACTTCGAAAACGGCGGCGCGCGTTATGCAGCGGGACGCAGCAATCTCTACGATCCAGTGGAAATCGCCAGACCCGGCACGCCGACC CGCAATGACGCCAAGGTCTACACAGAGAACCGCTTCAGCGGCGTGGCCTTGTCCGACACGCTCGGTTTCTTCGACGATCGCCTGTTGCTGACTTTGGGCG CGCGCTGGCAGCGGGTCAAAGTCGATGACTGGAGCGACGGCATCAAGGGCGACACGGCTTACGATGAGGAAAAAGTCTCGCCGTCGGGCGGAATTCTGTT CAAGGCAACCGACAAACTTTCGCTGTACGCCAACTACATGGAAGGTCTGAGCCAAGGCAAGATCGCGCCATCAACGTCAATCAACGAAGACGAAATCTTC CCGCCATTCATCAGCCGCCAGGTCGAAGTCGGGGCCAAGTACGACGCGGGCGCATACGCGCTGACGGCAGCGGTGTTCCGCATTAAACAACCGGCGTACG AAACCAACGCCACCACGCGAGTCTTCGGCCCGAACGGCAAGCGCGAGAACAACGGCGTGGAACTGAGCGTGTTCGGCGAACCGCTCAAAGGCTTCAGGTT GCTCGGCGGTGTGATGTACATCGATAGCGAACTGAGCCAGACCACCAACGGCACGTTCGACGGCAATCGCGCACCGGCGACACCCAAATACAACGTCAAC CTTGGCGCGGAGTGGGATGTGCCAAACGTGCAGGGGCTGACCCTGACCAGTCGCGGGATTTACTCGAGTTCGCAGTATCTGGATCAGTCGAATGACAAAG AAATCGACTCCTGGGAACGGTTCGACGTAGGCACACGCTATGCTTTCAAACTGGATGAGAAGACCATTACCTTGCGCGCCAACGTCGAAAACGTGCTGGA TAAACGCTATTGGAGTTCGGCGGGTGCGTCTGATGACAGTGAGCCGGGGTTGACGCTTTCGACGCCGCGAACGTATCTGCTGTCGGCAACGGTGGATTTT TAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGAGTGGGGGAAAATCGTCGAATGTCGCCAAAAATACGTTAACTCCACTAAATGACCGTTTAGTTGAGCTAGACTAAAATACGGGAAACATGCCGGGGA AGGCCATGATTCAGCGTAAGCCGAATGCTACAGATGTGATTGCTGCGCTGAATCTACAGCCTCATGTCGAGGGCGGTTATTACCGCAGAACCTATCAAGC TGATCACCGTGATTACCTCGAAACGCAGAGAGGCCCGCGATATCTGCTGACTTCGATCTACTATCTGCTCACTGAGCAATCGCCGGTGGGCCAGTTTCAT TTCAACCAGTCCGACATCCTGCATTATTTCCAGTTGGGCGACGCCATCGAATACCACCTGATCCACGCTGACGGCTCACTGCAAACGCTGGTAATGGGCA GCGATGTTTTGACAGGCCAGCAATTGCAATTGCACGTACCGGGTGGAATTTGGAAAGCCTCTCGATTACTGGAAGGCTCGAACGGCTTTGGCTTGATCAG
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| Amino Acid Sequence |
>TonB-dependent receptor
MPAVFPGRLRPLLQLSLLLSLSASPVLIQSSWADDGSRRSYQVPAGSLSAALTRFAGLAGVNLSVDPALVSGRSSNGLSGEYGVEEGFSRLLLGSGLQLQ PVGDQAYTLVPAAEGSTLQLAPTSILGASDSADADVFAGGQVARRGSQGLLGSRDFMETPFSMTTYTSETVKNQQARTLGDLIGSDPSVRATNPAGGRYE QFTIRGFSLFNSDVSYNGLYGILPTYTIDMEMADRVDILKGPSQLINGISPRGSVGGGINVVPKRATDKPITSLTANYASNNQVGGAVDVGRRFGEDNQF GVRFNGVKQSGDTEWDHQSVDRDMAVVGLDFRGERLRLSTDIGHTERDTDAPQERVQVAANAKVPNANDVRDNYAQPWSQARTKDTFGTVNGEFDVSDSV MLYGGVGARKSNHDFLRHAVSVTNDAGDFSVQPRDFTRDENVRTATAGVRNWFQTGPVSHEVNLAANYFYMDFENGGARYAAGRSNLYDPVEIARPGTPT RNDAKVYTENRFSGVALSDTLGFFDDRLLLTLGARWQRVKVDDWSDGIKGDTAYDEEKVSPSGGILFKATDKLSLYANYMEGLSQGKIAPSTSINEDEIF PPFISRQVEVGAKYDAGAYALTAAVFRIKQPAYETNATTRVFGPNGKRENNGVELSVFGEPLKGFRLLGGVMYIDSELSQTTNGTFDGNRAPATPKYNVN LGAEWDVPNVQGLTLTSRGIYSSSQYLDQSNDKEIDSWERFDVGTRYAFKLDEKTITLRANVENVLDKRYWSSAGASDDSEPGLTLSTPRTYLLSATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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