Pseudomonas fluorescens SF39a, NX10_RS04155
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTCGCCGGCACGCAACAGGGTGCCGACCCGCTCTTTCATTTCGCGCGCGGCCTTGTTGGTAAAGGTCATGGCGACGATGTACTGGGCGCGGATGCCGCA GTTCTGGATCAGGTGCGCGATCTTGCGCGTGATCACGCTGGTCTTGCCGGAGCCAGCACCGGCGAGCACCAATAGAGGGCCGCCGACGTAGTTCACGGCT TCTTGCTGCCGGGGATTGAGTCGGGACATACGAAAATTCGGGAGTCGTTGACGAAATGGGCCGGCATTTTAACAGGCTCAGCGATTTCTGCTGCTCTGTC CGACTTGTGACGCAGCACGCGATTCAGATTTGCCGGTTTTGTTACTTTCACGCAGGATGCGCGGGGATTTTGCGGCTAATGTTCTCCTTCTGACGCAAAA TAACGTTTTGATGCCGTTGTCATCAGACAACACATTGGTCATTGTTCAGCACAACGGCATAATGCCCCGCCTACATCATTGCAGAGTCTAGGGAGTCAGC
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| DNA Sequence for Gene |
>NX10_RS04155
TTGTCTACGCCTGTCGAACCCTTGCGTTTGCTGCTACTGGCCGAAGAGCCAGCGTGGACAGCGTTGTTGCGTGAGTGTCTGGCTCCGATGGGGAGCGCGG CGGTGCTGATCAGCGCGCCGAACTGGGATTCAGTCAGCCGCCTGTTCGAGGACAACCGCCACGCGGTACTGCTGACCCTGCCGGCGTTGCAACCGCCGCC CGGGCGCTGCAGCCTGCCGACCGTTCTGCTGCTGGAGCACGAACCGGCCACCGCGCCGATCGGTGTCAGTGACTGGCTGGTGTTCGACGCCCTCGATGCC GGCATGCTCCAGCGTTGCCTGCGCCATGTGCGCGAACGCGGCGTGCTGGAAAACACTTTGCAGCGCCTGGCCGAACAGGACCCGCTGACCGGCATCGCCA ACCGTCAGGGCTTTCAGACCCTGCTCACCGCGCGTCTTGCCGAAGGCGACGGTCGCGGTCTCGCTCTCGGCCACCTCGATCTCGACAATTTCCGCCATGC CAACGACGCCCTTGGTCATCAGGCTGGCGATCGCTTGATCCTGCAAGTTGTTGCGCGGCTGAAAAGTCAGCTGGAGGCCGGCGATCAACTGGCGCGGCTG GGCAGTGATGAATTCGCTTTGCTGATCGACACCCGCCGCGCGCCGCAACGCGCCGAGTGGATGGCTGAACGCATCACCGAAGCCTTGGCCGAACCTTATT GGGTCGACGGCGAGAGCCTGCTGATCGGTTCCAGCCTCGGCATCGCCCATGCCCGCGCCAATGGCGGCGCCGATCCGCTGATGTGGCACGCGCACATCGC CATGCAGCAGGCCAAGAGCACACAGGGCTGCACTTTTCATATCTTCAACGAACGCATCAACCGCAACGCGCGCAGCATGGCCGACCTCGAAAGTGAACTG CGCCGGGCCTTGCGCCGCGATGAACTGGAACTGCATTACCAGCCACGCCTGAATCTTGCGGACGGCCAGATTGTCGGCCTTGAAGCGCTGGTGCGCTGGC GTCATGGCGAACGCGGTCTGTTGCCACCGAGCGAATTCGTGCCACTGGCCGAACAGAGCGGTCTGATCGTGCCGCTGGGTTACTGGGTGATCGCTCGCGC GCTGCGTGACATGCAGGCATTGCGCGAACAGGGTCTGGCGCCGCTGCACATGGCGATCAACCTGTCGTTCCGGCAGTTTCAGGACAGCCAGTTGCTGCCG ACGCTCAGCCGTCTGATTGCCGAACGCGGCGTCGAGGCGCAGTGGCTCGAGTTCGAACTGACCGAAACCGCGGTGATGCGGCGCAGCGATCTGGTCAAAC AGACCATGGACGCCCTCGGCCGCCTCGGCGTGCGCTTCTCGCTGGACGATTTCGGCACCGGGTTTTCGTCGTTCGTGCACCTCAACAGCCTGCCGATCAC CTTGCTGAAGATCGACAAGAGTTTCGTCGGCGGCATGGAACAGCGCGAAGAGAACCGCAAACTGGTACACGCGATGATCAACCTCGCGCACAACCTGCAC CTGGAAGTGGTTGCCGAAGGGGTCGAGACGCCGGAGCAGCTGGATTTGTTGCGCGGGTTCGATTGCGATCAGGTGCAGGGCTATCTGATCAGCCGGCCGT TGCCGTTGGATGAGTTGGTGGAATATCTTACCTTTGGAGCCAGTCAGCAGGTTTCGGTGGAAGCCATTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGATCGCAGCCTTCGGCAGCTCCTACCTTGGAATGTGTTCCCTTGTGGGAGCCGCCGAAGGCTGCGATCTTTTGATCTTAATCCGCGCCGATGGCCTCG AACCTCTCTGCAACTGGCTCGCGCCGAATCATCCGCTGCATCTTCCATTCAAACGCCAGCGTCAGGCTCACCGCCGCGCATGCCAGCCCCAGCGCCAGGC CCCACCACACGCCCGTCGGCCCCCAATTGAGGTGGAACGCCATCCACCACGCCGCCGGTGCGCCAATCAGCCAATAGCAAGCGAGCCCCACGAGAAATGT GGTTTTGGCATCCTTGAGTCCACGAATGCAGCCCATGGCAATCGTCTGCGTGCCGTCGAACAACTCGAACCACGCCGCCACCGCCAACAGGCTCACCGCC AGACGGATCACCTCGGCAAACGCCGGGTCGTTGTGGTCGAGGAACAGGCCGACCAACTGATTCGGCCACAGCCAGAACACCAGGGCGAAGCCGAGCATTA
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| Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLAEEPAWTALLRECLAPMGSAAVLISAPNWDSVSRLFEDNRHAVLLTLPALQPPPGRCSLPTVLLLEHEPATAPIGVSDWLVFDALDA GMLQRCLRHVRERGVLENTLQRLAEQDPLTGIANRQGFQTLLTARLAEGDGRGLALGHLDLDNFRHANDALGHQAGDRLILQVVARLKSQLEAGDQLARL GSDEFALLIDTRRAPQRAEWMAERITEALAEPYWVDGESLLIGSSLGIAHARANGGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSMADLESEL RRALRRDELELHYQPRLNLADGQIVGLEALVRWRHGERGLLPPSEFVPLAEQSGLIVPLGYWVIARALRDMQALREQGLAPLHMAINLSFRQFQDSQLLP TLSRLIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKIDKSFVGGMEQREENRKLVHAMINLAHNLH LEVVAEGVETPEQLDLLRGFDCDQVQGYLISRPLPLDELVEYLTFGASQQVSVEAI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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