Pseudomonas fluorescens SF39a, NX10_RS03970
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTCGGTTAAATCAACACTTCCCAAAATGCCCGCAGGCGCTTTACATTGGTGCTTGCAGCGCGTTGAAGGGTCTGGTCAAAAAATCAGCGCTTCCCTAA TCGCTGGTGATTTTTTAAACTGTTCAGTCCGCTCGCCCAACCGGGCAGCGCGCATATTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAA GACTGCCTAGAACACGTGGAAAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACCGGCGGCAAAGAGCCACTGGTTCAGT GGGAAAACGACAAGCCGACTGTTGTCGCGCTGCGTGAAATTGCTGAAGGCGTGATGAGCTACGAGTACATCGCCGAGCAGGAAATCGTCCAGGATGAACC GCTGTTCGCAGCGTTCGAGGACGAGTCGAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGGTCACAGCTTTCGGCAGGATTCATC
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| DNA Sequence for Gene |
>NX10_RS03970
ATGCCGAGCATAGACGCCCTCGCCGACCGCTTATCGACCTACCTCGGCAATGACCAGGTCAACCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ATGACGGTCAACGCCGTCGCAGTGGCGAGGCGTACGTCACGCATCCTCTTGCCGTGGCAAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCTGCGATGCTGCATGACGTGATCGAAGACACCGGTATCGCCAAGGAAGCGCTGCAAGCGCAGTTCGGTGAAACTGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAATTTCGAGACCAAGGCCGAAGCCCAAGCCGAAAACTTCCAGAAGATGGCCATGGCCATGGCGCGCGACATCCGGGTGATCC TGGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGCGAAAAACGCCGGCGCATCGCCAAGGAAACCCTCGAAATCTACGC GCCCATTGCCAACCGCCTGGGCATGCACGCGATCCGCATCGAATTCGAAGACCTCGGTTTCAAGGCCATGCACCCGATGCGTTCCGCGCGGATCTACCAG GCGGTCAAACGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAGTCCCTCGGCCACTGCCTCGCCATCGACGGCATCCAGGGCGAAGTCA GCGGTCGGCAGAAACACCTCTACGGCATCTACAAGAAAATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTCTACGCGTTCCGGATCATCGT CGACAAGGTCGATACCTGCTACCGCGTACTGGGTGCTGTGCATAATTTGTACAAACCGTTGCCGGGACGCTTCAAGGATTACATCGCGATTCCCAAGGCC AACGGCTACCAGTCGCTGCACACCACGCTGTTCGGCATGCACGGTGTACCGATCGAGATCCAGATCCGCACCCGCGAAATGGAGGAGATGGCCAACAACG GCATTGCCGCTCATTGGCTGTACAAATCCAGCGGCGACGAGCAGCCCAAAGGCACGCACGCACGCGCTCGCCAATGGGTCAAAGGCGTGCTGGAAATGCA GCAGCGCGCCGGCAACTCGCTGGAATTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAG CTGCCAAAAGGCTCCACGGCAGTCGACTTTGCCTACGCGGTACACACCGACGTCGGCAACAGCTGCATCGCCTGCCGTATCAACCGTCGTCTCGCGCCAC TGTCCGAACCGCTGCAAAGCGGCTCCACGGTCGAGATTGTCAGCGCTCCCGGCGCACGGCCAAATCCGGCGTGGCTCAACTTCGTCGTTACCGGCAAGGC CCGCACGCACATTCGTCATGCGCTGAAACTGCAGCGCCGCTCCGAATCCATCAGCCTCGGCGAACGCCTGCTGAACAAGGTCCTCAACGGTTTCGACAGC TCGCTGGAAAAGATCCCGGCCGAGCGGGTCAAGGCGATGCTCACCGAATACCGCCTCGAACTGATCGAAGACCTGCTCGAAGACATCGGCCTGGGCAACC GCATGGCCTATGTGGTCGCCCGCCGTCTGCTTGGCGAAGGCGAGCAGCTGCCGAGCCCGGAAGGCCCGCTGGCGATTCGCGGCACCGAAGGTCTGGTGCT CAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATCGTCGGGCACCTGTCGGCGGGCAAAGGCATGGTCGTGCACCTGGATAACTGCCGCAAC ATCAGCGAAATCAGGCACAACCCGGAAAAGTGCATCCAGCTCTCGTGGGCCAAGGATGTCACTGGCGAATTCAACGTCGAGCTGCGGGTCGAGCTGGAAC ATCAGCGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCGGCCGACGGCAACATCGAGAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT CGTGCAGTTGGTGGTCAGCGTCCACGACCGTGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCTTGACCGGGGTGATCCGCATCACCCGCATGCGT GCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCTGCCTATTACAAGGAGTCCTACATGACCAAAACCGTCATCACCAGCGACAAGGCCCCGGCCGCCATCGGCACTTACTCCCAGGCGATCAAGGCAGGC AATACTGTTTACATGTCGGGCCAGATCCCGCTGGACCCGAAAACCATGGAACTGGTTGAGGGCTTCGAAGCCCAGACCGTCCAGGTCTTCGAGAACCTCA AAGCCGTAGCCGAAGCTGCCGGCGGTTCGTTCAAGGACATCGTCAAACTGAACATCTTCCTCACCGATCTGAGCCACTTCGCCAAGGTCAACGAGATCAT GGGCAAGTATTTCGACCAGCCTTACCCTGCCCGCGCCGCCATTGGCGTGGCCGCCCTGCCGAAGGGTGCGCAGGTTGAAATGGATGCCATTCTGGTCATC GAGTGATGCGCACGGCGCGGCTTTCACGCCGCGCCGACTGCCGCAAGAAAAGGTTTTGAAAGGATTCCACCATGCGCAAAGCGCTAGCTCTCTCGCTGCT
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSTYLGNDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLGHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS SLEKIPAERVKAMLTEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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