Pseudomonas fluorescens SF39a, NX10_RS03725
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CACTGCAGGGGCGTGTTTCTTGAAGATAAAAGTTTCAAGTTAATGAAATGCCATCATTATGCTGGCACTTTCGTGTTGTTCGTTGTCCCAAGCGAATGGT TGAAAGTGGACTATCCGTATTCGGAAGTGTCCTACTTCTATTTTTTTTTGAATTTGGCATGCTGCACGCCACTCGAGGATACGAGCGTCAGGTAAACTCG CCCGGCCGTGGCGCAGGGCTCTGGGTCAAGGGTTTGACAGGGTCATGGAAAATTCGTCGTGTATTAATCGGCCTCAGGGAAACCCCTGCGACATATAGGG CGATCTCCTACAGACCTCAACGAACAGTTCGTCTTGTTGTTTAATCAGATGCTTGCTAGTGGCCATCATAGTGATTACGATGCGCCCACTTGAAAGAGCA CATCTCAATTGGATGAGTCGCTGAACTGCTCTTCGATACTGTCCCGCGTTGCTGAAACTCCATTCGCACGCATGACTGTAATCCTTAATAAAGGCCATGG
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| DNA Sequence for Gene |
>NX10_RS03725
ATGTCCTACTCAAGCAAACTTTCCGCCCATTACCTCGAACTCGCAAAAGTCTCTGTTTCCAAAGAGAATTTCGCGGGCGAAGACGTTCGTTTCTCGAGCG AATTCGAGGCGCTGGAAAGTGAGCTGGCCAAGGCTTCGTCGATGCACGAAAGCGGGCAGATCGACTGGCTGAAAATCCGCGAAAACAGCGAAAATCTGCT GCGTACCCAATCCAAGGATCTGCGTGTCGGCGCCTGGCTGACCTGGTCGCTGTACCAGCGCGAATCCTTCCCCGGGCTGCTGGCCGGCCTCGGTCTGCTG CACCATCTGTCGGAAAACAACTGGGCCGACGTCCACCCGCTCAAACCCCGTACCCGTGCCGCCGCGATCGGCTGGCTGGTGCCGCGTCTCGAGCAGGTCA TCACCGAAAACATTGCGATCAAAGAGCAGTTGCCGATGTTCCGGCAGCTCTCCGAGCACCTGGCCGGTCTTGAGGCAGCGTGCACTGCACATCTGGGCGA TGACGCGCCGCTGTTATTGCCGATCTCCCGCCGCCTGAAAACCATGATCCAGCGTGCCGCCGACAACCAGCCGGCCCCCGGCGTGGTGGGCGCGGCGGTG GCGCAGGTCAAGCAGGCCGCGACCCAGTTGCTCACTCCTGGCGCGCCGATCGACAACGAACGCGATGCGCACAAAGCCCTGCGCGCCCAGCAGGACAGCG CCCGGCCGTTGTGTGCCTGGTGGCTCAAACAGAAGGCTACCGATCTGCGCGCCCTGCGCCTCAATCGCACGCTGTTGTGGATGACCATCGACGCGGTGCC CGAGCGCAACGCCGAGCAGATCACCGTATTGCGCGGCCTGCCGCTGGAAAAGCTCAAGCTCTATCAGGACCGTTTCGATCAGGGCAAATACGCCGACCTG TTGGTGGAACTGGAGGCGAGCCTGGCGAAGGCGCCGTTCTGGTTCGATGGCCAGAGGATGGTCTGGGAATGTCTCCAGAACCTCAACGCCGAATTGGCAA TGCGCGAAGTGGAAATCCACTTCGCGCTTTTGATTCAGCGCCTGCCGGGCATCATCGAGTTGCGCTTCCATGACGGCGCGCCGTTTGCCGATCCGTCCAC CCGGGCGTGGATCGCCGCCAATGTCATGCCGCACCTGCAAAGCGCCAGCGCGCCGCGCAAGGTCGAAAGCGAGAACGTCGAAACCCAGCCGGCGTGGGAA AAAGCCCTCGAGGAAGTCCAGCCGATCCTGCGCAAGGAAGGTTTGAAACCGGCCGTGCAGATTCTCAAGCAGGGTCTGCAATCGGCCCACGGTGGCCGTG AACGCTTCTTCTGGCAGTTCAGCCTCGCGCGGCTGTGTTTCCTGGCCAAGAAATACGAACTGGCCAAGAACCAGCTCGAAACCCTCGATCAGACATTACA GGACTCAGGCCTGCACGCCTGGGAGCCCGATCTTGCATTGCAAGTGCTGCACCTGCTGCACAGTTGCTGCGAGTTGTTGCCGCAGAACCACGCCGTACGT GAAAGCAAGGAAGAGATTTATCGCAGGCTGTGCCACCTCGACCTCGAAGTGGTACTCGAATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCCAGGGCCACAACCGCAAGGAGAAAAGCCATGGCCAAAGAAGGCTCGGTAGCCCCCAAGGAACGCATCAACGTCACCTTCAAACCCGCCACCGGCGG TGCTCAGGAAGAGATTGAACTGCCGCTGAAGCTGCTGGCAATCGGTGACTACACCCACCGCAAGGACGATCGCAAAATCGAAGATCGCAAGCCGATCAGC ATCGACAAGATGACCTTCGACGAAGTGTTGGCCAAGCAAGAGCTGGGTCTGACGCTGAGCGTGCCGAACCGTCTGCAGGAAGATGGCGAGGCTGAAGAGC TGGCCGTGCAATTGCGCGTCAATTCGATGAAGGACTTCAACCCGGCCAGCCTGGTCGAGCAAGTGCCTGAGCTGAAAAAACTGATGGAACTGCGCGATGC GCTGGTGGCCCTCAAAGGCCCGCTGGGTAACGCACCTGCGTTCCGTAAAGCGATCGAAGGCGTGCTCGCCGACGACGAATCCCGCGGTCGCGTACTCGGT
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MSYSSKLSAHYLELAKVSVSKENFAGEDVRFSSEFEALESELAKASSMHESGQIDWLKIRENSENLLRTQSKDLRVGAWLTWSLYQRESFPGLLAGLGLL HHLSENNWADVHPLKPRTRAAAIGWLVPRLEQVITENIAIKEQLPMFRQLSEHLAGLEAACTAHLGDDAPLLLPISRRLKTMIQRAADNQPAPGVVGAAV AQVKQAATQLLTPGAPIDNERDAHKALRAQQDSARPLCAWWLKQKATDLRALRLNRTLLWMTIDAVPERNAEQITVLRGLPLEKLKLYQDRFDQGKYADL LVELEASLAKAPFWFDGQRMVWECLQNLNAELAMREVEIHFALLIQRLPGIIELRFHDGAPFADPSTRAWIAANVMPHLQSASAPRKVESENVETQPAWE KALEEVQPILRKEGLKPAVQILKQGLQSAHGGRERFFWQFSLARLCFLAKKYELAKNQLETLDQTLQDSGLHAWEPDLALQVLHLLHSCCELLPQNHAVR ESKEEIYRRLCHLDLEVVLE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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