Pseudomonas fluorescens SF39a, NX10_RS03185
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGAGTTGCCTCACGATGCCGCGTTCTTCATAGCCCAGCGCATCCGCTCCAACGTCCGTGAGCTGGAAGGTGCGCTGAAACGGGTTATCGCCCACTCGCA CTTCATGGGCCGCGACATCACCATCGAGCTGATCCGCGAATCCCTGAAAGACTTGCTGGCGTTGCAGGACAAACTGGTCTCTGTGGATAACATTCAGCGC ACCGTCGCCGAGTATTACAAGATCAAGATTTCCGACCTGCTGTCCAAGCGCCGTTCGCGCTCGGTGGCTCGTCCGCGTCAGGTCGCCATGGCGTTGTCCA AGGAACTGACCAACCACAGCCTGCCGGAAATCGGCGATGTGTTTGGCGGCCGCGACCACACCACCGTGTTGCACGCCTGCCGCAAGATCAACGAACTTAA GGAATCCGACGCGGACATCCGCGAGGACTACAAGAACCTGCTGCGTACACTGACCACTTGATGAACACCAGCGCAGCTTATTAAGGCAAGGGACTAGACC
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| DNA Sequence for Gene |
>NX10_RS03185
ATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCCCTGCAACTGGTCGCAGGCGTCGTCGAGCGCCGACAGACCTTGCCGGTACTGTCCAACGTGC TGTTGGTCGTCGAAGGCCAGCAACTGTCGTTGACCGGTACCGACCTTGAGGTCGAGCTGGTCGGTCGCGTGCAACTTGAGGAGCCGGCTGAATCAGGTTC CATCACCGTGCCGGCGCGCAAGCTGATGGACATCTGCAAGAGCCTGCCCAACGATGCGCTGATCGACATCAAGGTCGACGAGCAGAAGCTGGTAGTGAAG GCCGGTCGTAGCCGCTTTACCCTGTCGACCCTGCCGGCCAACGATTTCCCGACCGTCGAAGAAGGCCCGGGCTCGCTGACCTGCAGCCTGGAGCAGAGCA AACTGCGTCGTCTGATCGAACGCACCAGCTTCGCCATGGCCCAGCAGGACGTGCGTTACTACCTCAACGGCATGCTGCTGGAGGTGTCCGCCGGCGTGAT CCGCGCCGTGGCTACCGACGGCCACCGTCTGGCGATGTGCTCGATGCAGGCTGATATCGGTCAGCCGGATCGCCATCAGGTGATCGTGCCGCGCAAAGGT ATCCTCGAACTGGCGCGTCTGCTCACCGAGCCGGACGGCAATGTCAGCATCGTCCTCGGTCAGCACCACATTCGCGCCACCACGGGCGAGTTCACCTTCA CCTCGAAACTGGTTGACGGTAAATTCCCGGATTACGAACGCGTACTGCCCAAAGGTGGTGACAAGCTGGTACTCGGCGATCGTCAGGCGCTGCGTGAAGC GTTCAGTCGTACCGCGATTCTGTCCAACGAGAAATACCGCGGTATCCGTCTGCAACTGGCCAGCGGTCAGTTGAAGATCCAGGCCAACAACCCGGAGCAG GAAGAAGCGGAAGAAGAAGTGGGCGTGGAATACAACGGCGGCTCGCTGGAAATCGGCTTCAACGTCAGCTACCTGCTCGACGTGCTGGGCGTGATGACCA CCGAGCAGGTTCGCCTGATCCTGTCCGACTCCAACAGCAGTGCGCTGGTGCAAGAGTCCGACAATGACGACTCGGCTTACGTTGTCATGCCGATGCGTCT GTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGCTGATCCTGAATGTCGTTAAGTCGTGTTTCGGTCACCGCGGTGCGCAATCTGCACCCGGTGACCTTTTCCCCCTCCCCCCGCATCAACATTCTTTA CGGCGCCAACGGCAGCGGCAAAACCAGTGTTCTGGAAGCCATTCATCTGCTGGGGCTCGCCCGTTCGTTTCGCAGCACGCGGCTTTTGCCGGTGATTCAG TACGAACAGCTCGCCTGTACCGTGTTCGGTCAGGTTGAACTGGCTGAAGGCGGCCACAGTGCCTTGGGAATTTCTCGCGACCGTCAGGGCGAGTTCCAGA TTCGCATCGATGGCCAGAACGCCCGTAGCGCTGCCCAGTTGGCGGAGATCCTGCCATTGCAGTTGATCAACCCGGACAGCTTCCGTCTGCTGGAAGGCGC GCCGAAGATTCGCCGGCAGTTTCTCGACTGGGGTGTGTTCCACGTTGAGCCGCGTTTCATGGCCACCTGGCAGCGTTTGCAGAAGGCGCTGCGCCAGAGA
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| Amino Acid Sequence |
>DNA polymerase III subunit beta
MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLEEPAESGSITVPARKLMDICKSLPNDALIDIKVDEQKLVVK AGRSRFTLSTLPANDFPTVEEGPGSLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIRAVATDGHRLAMCSMQADIGQPDRHQVIVPRKG ILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQ EEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALVQESDNDDSAYVVMPMRL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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