Pseudomonas fluorescens SF39a, NX10_RS03175 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCTTCGAACAGACCTTGAGCGAACTGGTTGAGCTTGAGGGTTTGACGCTCAGCTATTACCGAGGCTGGGACAAGGACCGCGAATTGAGCGCCGTACTCG CCGGTTCCGTGCAACGGGACCAGCAGATGGGGCACACCCAGGCCGGACCGCAACGCGCTGATTTGCGTCTCAGATTGGGCGCACACAATGCCGCAGACAT CCTGTCCCGGGGTCAGCAGAAATTGGTGGTCTGTGCGCTACGGATTGCCCAAGGGCATCTGGTCAGCCAGGCCCGTCGCGGACAGTGTATTTATCTGGTG GATGACTTGCCGTCCGAGCTGGACGAGAGCCACCGTCGCGCGCTGTGCCGCTTGCTGGAAGACTTACGCTGCCAGGTGTTCATCACCTGTGTAGATCACG AATTACTGAGGGAAGGCTGGCATACGGAAACGCCAGTCGCTTTGTTCCACGTGGAACAGGGCCGTATCACCCAGACCCACGACCATCGGGAGTGAAGGCA
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| DNA Sequence for Gene |
>NX10_RS03175
|gyrB
TTGAGCGAAGAAAATACGTACGACTCAACGAGCATTAAAGTGCTGAAAGGCCTGGATGCCGTACGCAAACGTCCCGGTATGTACATTGGTGACACCGACG ATGGCAGCGGTCTGCACCACATGGTGTTCGAGGTGGTCGACAACTCGATCGACGAAGCCCTCGCCGGCCATTGCGACGACATCAGCATCATCATCCACCC GGACGAATCCATTACCGTTAAAGACAACGGTCGTGGCATCCCGGTAGACGTGCATAAAGAGGAAGGCGTTTCCGCCGCCGAGGTCATCATGACCGTCCTC CACGCTGGCGGTAAGTTCGACGACAACTCCTACAAGGTATCCGGCGGTCTGCACGGTGTAGGTGTTTCGGTAGTGAACGCACTATCCGAAGAACTGGTCC TGACTGTTCGCCGCAGTGGCAAGATCTGGGAACAGACCTACGTCCACGGTGTGCCTCAGGCACCGATGGCCATCGTTGGCGACAGCGAAACCACCGGCAC CCAGATCCACTTCAAGGCTTCCAGCGAAACCTTCAAGAACATTCACTTCAGCTGGGACATTCTCGCCAAACGCATTCGTGAACTGTCCTTCCTCAACTCC GGTGTCGGCATCGTCCTCAAGGACGAGCGCAGCGGCAAGGAAGAACTGTTCAAGTATGAAGGCGGCCTGCGTGCGTTCGTTGAATACCTGAACACCAACA AGACTGCGGTCAACCAGGTGTTCCACTTCAACATCCAGCGCGAAGACGGCATCGGCGTGGAAATCGCCCTGCAGTGGAACGACAGCTTCAACGAGAACCT GTTGTGCTTTACCAACAACATTCCGCAGCGCGACGGCGGCACCCACCTGGTGGGCTTCCGTTCGGCACTGACGCGCAACCTGAACAACTACATCGAGCAG GAAGGTCTGGCGAAGAAGCACAAAGTCGCCACCACCGGTGACGATGCCCGTGAAGGCCTGACCGCCATCATCTCGGTGAAGGTGCCGGATCCGAAGTTCA GCTCGCAGACCAAAGACAAGCTGGTGTCTTCCGAAGTGAAAACCGCGGTTGAACAGGAGATGGGCAAGTACTTCTCCGACTTCCTGCTGGAGAACCCGAA CGAAGCCAAGCTGGTGGTCGGCAAGATGATCGACGCCGCCCGTGCCCGTGAAGCTGCGCGCAAGGCCCGTGAGATGACCCGCCGCAAAGGCGCGCTGGAC ATCGCCGGCCTGCCGGGCAAACTCGCTGACTGCCAGGAAAAAGACCCGGCGCTGTCCGAACTGTACCTGGTGGAGGGTGACTCCGCGGGCGGCTCTGCCA AGCAGGGACGTAACCGCAAGACCCAGGCGATCCTGCCGTTGAAGGGCAAGATCCTCAACGTCGAGAAAGCCCGTTTCGACAAGATGATCTCGTCCCAGGA AGTGGGCACGCTGATCACCGCGCTGGGCTGCGGCATCGGTCGCGAAGAGTACAACATCGACAAGTTGCGCTATCACAACATCATCATCATGACCGATGCT GACGTCGACGGTTCGCACATCCGCACCCTGCTGCTGACCTTCTTCTTCCGTCAGCTGCCGGAGCTGATCGAGCGTGGCTACATCTACATTGCCCAGCCAC CGCTGTACAAGGTCAAGAAAGGCAAGCAAGAGCAATACATCAAAGACGACGACGCCATGGAAGAGTACATGACGCAGTCGGCCCTGGAAGATGCAAGCCT GCACCTGAACGAAGAAGCCCCGGGCATTTCCGGTGAAGCGCTGGAACGTCTGGTCAACGACTTCCGCATGGTGATGAAGACGCTCAAGCGCCTGTCGCGC CTGTACCCACAGGAGCTGACCGAGCACTTCATCTACCTGCCGGCCGTCAGCCTCGAAACTCTGGGCGACCACGCAGCGATGCAAGAGTGGCTGGCCCAGT ATGAAGTTCGCCTGCGCACCAACGAGAAGTCCGGCCTGGTCTACAAGGCCAGCCTGCGCGAAGACCGTGAACGTGGCGTCTGGCTGCCGGAGGTCGAACT GATCTCCCACGGCCTGTCGAACTACGTCACCTTCAACCGCGACTTCTTCGGCAGCAACGACTACAAAACCGTGGTCACCCTGGGCGCGCAACTGAGCACC CTGCTCGATGAAGGCGCGTACATCCAGCGTGGCGAGCGCAAGAAAGCCGTTACCGAGTTCAAGGAAGCCCTCGACTGGCTGATGGCCGAAAGCACCAAGC GCCACACCATCCAGCGCTACAAAGGTCTGGGCGAAATGAACCCGGATCAGCTGTGGGAAACCACCATGGACCCAAGCGTGCGGCGCATGCTGAAAGTCAC CATCGAAGACGCCATCGGTGCAGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAACCGCGCCGAGACTTCATCGAGAGCAATGCACTGGCGGTT TCCAACCTGGATTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCTCCTGATTGCTACCCGCTCATGAAAAACCCCGGCCAACGCCGGGGTTTTTTTGCCTCAGTCATTCCCAGTGCCGACACTCTCCAACCGATACCCATA CCCATAAATTGTCAGCAACTGCCAACCCCGATCCGCTGTCAGCCCGAGCTTGTTGCGCAATCGGTATATATGCGTATCCAGTGGCCGCGAGGAAGTTGTC TCCTCGTTCGGCCAGAAGCGCTCGTACAGGTAATCCCGCGACAATGGCCGCCCCAGGTTGCTGAACAGGCAGCGCGCCAAGCGGTATTCGCGTTCGGTCA TGAGGATCGGTTTGCCTTCACGGGTGACGGTCAGTTCGGCGTCGTCGAAAGTCAGATCGTGAAACGTCTGTATTTCGCCCGCCGCGCTGCGCGGTTGGCT ATGCCGACGCAATACCGCAGCCACCCTCGCCTTCAACTCATTCGGGCGAAACGGCTTGCTGACATAATCGTCGGCCCCGGCATTCAAGGCTTGAACGATA
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSEENTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITVKDNGRGIPVDVHKEEGVSAAEVIMTVL HAGGKFDDNSYKVSGGLHGVGVSVVNALSEELVLTVRRSGKIWEQTYVHGVPQAPMAIVGDSETTGTQIHFKASSETFKNIHFSWDILAKRIRELSFLNS GVGIVLKDERSGKEELFKYEGGLRAFVEYLNTNKTAVNQVFHFNIQREDGIGVEIALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQ EGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQYIKDDDAMEEYMTQSALEDASLHLNEEAPGISGEALERLVNDFRMVMKTLKRLSR LYPQELTEHFIYLPAVSLETLGDHAAMQEWLAQYEVRLRTNEKSGLVYKASLREDRERGVWLPEVELISHGLSNYVTFNRDFFGSNDYKTVVTLGAQLST LLDEGAYIQRGERKKAVTEFKEALDWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPSVRRMLKVTIEDAIGADQIFNTLMGDAVEPRRDFIESNALAV SNLDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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