Pseudomonas fluorescens SF39a, NX10_RS20500

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain SF39a contig_18, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGTTCCGTTCCGGGCAGTTGCAGGAAGTCGGTCAGGATCAGGTCAAGGCCACGCTGATCCAGGATGACGGCAGCCTGTATCCGTTGCAGGGCAAGTTGTT GTTCAGCGACATCACCGTCGATCCGGGCACTGGCCAGATCATCCTGCGCAGCGAATTTCCCAACCCGGATCTCGACCTGCTGCCGGGCAGTTTCATCCGC GTACGCCTTGAGCAGGCGACCATCCAGAACGGTATCACCGTGCCGCAACGCGCCGTTCAGCGCGACAGCGCCGGTATTGCCCAGGTACTGACCGTCGATG AGCAGATGCGCGTTTCGGCGCAACCAGTGCAACTGGGTGCGGTGCAGAACAATCGCTGGATCGTCACCGGCGGCCTGAAGCCCGGCGACCGTATTGTCAT CGAAGGCCTGCAACACGCCCGTCCCGGGGAAACGGTGCAGATCGACGAAACCCCTCTTCCACTTGCCCAGACCACTGGTCAGTAAGCAGGACGCTTTCAT
DNA Sequence for Gene
>NX10_RS20500
ATGCCGCAGTTCTTTATCGACCGCCCGGTGTTCGCCTGGGTGGTCGCCCTGTTCATCCTGTTGGCTGGTGCGCTGGCCATCCCGCAGTTACCGGTCGCGC AATACCCCGACGTCGCACCGCCGCAGATCGAAATCTACGCCGTCTACCCCGGCGCCTCAGCGCAGACCGTCGATGAAAGCGTGGTCAGCCTGATCGAGGA GGAACTCAACGGCGCCGATCACCTGCTCTATTTCGAATCGCAGAGCAGCCTCGGTAGCGCGACGATCAAGGCCACGTTCCAGCCGGGTACCAACCCGGAA CTGGCGCAGGTTGACGTGCAGAACCGTCTCAAGGTGGTCGAGTCGCGCCTGCCGCAAGCGGTCAATCAGCAGGGTTTGCAGGTGGAGAAGGTCTCTTCCG GTTTCCTCTTGCTGATCACTCTGACCTCCAGCGACGGCAAACTCGATGACGTGGCGCTCAGCGATTATCTGGCGCGCAACGTGATGAACGAGATCAAGCG GCTGGACGGTGTCGGCAAGGCGCAGTTGTACGGCGCCGAACGGGCGATGCGAATCTGGATCGATCCGCAGAAGCTGATCGCCTTCAACCTGACGCCGGCC GATGTCAACGAAGCCATCGTCGCGCAGAACGCCCAGGTTTCCGCCGGCAGCATCGGTGATCTGCCGTCACCTTCGACGCAGGAGATCACTGCGACGATTC TGGTCAAGGGCCAGTTGTCGACGCCGCAGGAATTCGCCGACATCGTGCTCAAGGCCAACCGCGACGGCTCCACGGTGCGCATCGGTGATGTCGCCCGGGT GGAAATCGGCAGTCAGGAATATCAATTCGGCACGCGCCTGAACGGCAAACCGTCCACCGCCGTCGGCGTGCAGCTCTCTCCTGGGGCCAACGCACTCAAC ACCGCGACGCTGGTGCGGGCGAAGATGGATGAACTGGCGCGCTACTTCCCGGCCGGCGTGGAATACAAGATTCCCTACGACACTTCGCCCTTCGTCAAAG TCTCGATCACCAAAGTGATCTACACCCTTGGCGAAGCGATGTTGCTGGTATTTGCAGTGATGTTCCTGTTCCTGCAGAACGTGCGCTACACGCTGATCCC GACGCTGGTGGTGCCGGTGGCGCTGATGGGCACGTTTGCGACCATGCTCGCGCTGGGCTTCTCGATCAACGTGCTGACCATGTTCGGCATGGTGCTGGCC ATCGGTATTCTGGTGGACGATGCCATCGTCGTGGTGGAAAACGTCGAACGGATCATGGCCAGCGAAGGTTTGTCGCCCAAGGAAGCCACACGCAAAGCGA TGAAACAGATTACTGGCGCGATCATCGGCATCACCCTGGTGCTGGTCGCCGTATTTATTCCGATGGCGTTCATGCAGGGTTCTGTTGGCGTGATCTATCA GCAGTTCTCGCTGTCGATGGCCACCTCGATTCTGTTCTCGGCGTTCCTCGCCCTGACGTTGACGCCGGCGTTGTGCGCGACCTTGCTCAAGCCTGTTGCC AAAGGCGAACATCACGAAAAGTCTGGATTCTTTGGCTGGTTCAATCGTCGTTTCGAGCAACTGACCGATCGCTATCAGGGTTGGGTGGGGTATGCGTTGA AGCGCACTGGTCGCTACCTGATGATCTACGTCGTCCTGCTGATCGGACTCGGGTTTTGTTTTGCGCGCCTGCCCTCCTCGTTTCTGCCGACCGAGGATCA GGGTTACACCATCACCGATATCCAGCTGCCGCCCGGCGCGACGAAAAACCGCACCGTGCAAGTAGCCGAACAGCTCGAAGCGCACAACGCCGGTGAACCG GGGATCAGTGACAGCGTAGTGATCCTGGGCTTCAGTTTCTCCGGTAGCGGCCAGAACGCGGCGCTGGCGTTTTCGACGCTGAAGGATTGGTCGGAACGTG GCAGCGACGATGCCGCCAGCTCGATCGCTGACCGCGCCAACGCGGCGCTGAGCCAGATCAAGGACGCCATGGCCTTCTCGGTACTGCCGCCGCCGGTGGA TGGCCTCGGCACGTCCAGTGGTTTCGAGTTCCGCTTGCAGGATCGCGGTGGACTGGGCCATGCGATCTTGATGCAGGCACGCACTGAGTTGCTCGCCGCC GCCGAAAAAAGTCCGGTACTGATGAACGTCCGTGAAAGCGCGCTGGCCGAAGCGCCGCAAGTGCAGCTGATCGTCGACCGCAAGCAGGCGAATGCCTTGG GCGTTTCGTTCGCCGACATCGGCAGTGTGCTGTCCACTGCGGTGGGCTCCAGCTACATCAACGACTTTCCCAATCAGGGGCGCATGCAGCGCGTGGTCGT GCAAGCCGAAGGTGATCGGCGCAGTCAGGTGGACGACTTGCTGAAAATGCACGTGCGCAACAACGCCGGGAACATGGTGCCGCTGTCGGCCTTCGTTCAG GCCGACTGGATTCAAGGGCCGGCGCAGTTGACCCGGTACAACGGCTATCCGGCGATTGCCATCTCTGGCGAGCCGTCACCTGGGCACAGTACCGGCGAAG CGATGGCGGAAATCGAGCGACTGGTAGCGCAGGGGCCGAAAGGTCTGGGCCAGGAATGGACCGGTCTGTCGCTTCAGGAGCGCTTGTCCGGCAACCAGGC GCCGATTCTGCTCGGCTTGTCGTTGCTGGTGGTGTTCCTGTGTCTGGCGGCGCTGTATGAGAGCTGGTCGATTCCGACGTCGGTGCTGCTCGTTGTCCCG CTGGGTGTGCTCGGCGCGGTGCTGGCGGTGACGATGCGCGGCATGCCCAACGACGTGTTCTTCAAGGTGGGTTTGATCACCATCATTGGCCTGTCGGCGA AGAATGCGATCCTGATCATTGAGTTCGCCAAGAGCCTCTATGACGAAGGTCACGATCTGATCGATGCGACGCTGCAGGCAGCGCGTTTGCGTCTGCGGCC GATTGTGATGACTTCGCTGGCATTCATTCTTGGCGTGGTGCCGTTGGCCATTGCCACTGGCGCCAGTTCCGCAAGTCAGCAGGCGATCGGCACTGGCGTG ATCGGCGGGATGATCACCGCCACGCTGGCAGTCATCTTCGTACCCGTCTTCTTCGTCGTCGTAATGAAACTCGTACAACGATTCACCAAACAACACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCCAAACTGTGGGAGCGAGCCTGCTCGCGAATGCGTCGGTACATTCGAAGCTGAGATTGACTGATCGGACGCCTTCGCGAGCAGGCTCGCTCCCACAGAG ATCTGCATACAGACAGCATTGTAGCCACACCTCTCATCGCTGGGCTAAGGTGTCATTACCCACTTGCCCACCGAGTCCTCATGCGCTTCCTCGCCCGCAC CCACCCTCGCCTGTCTGCCGCCGCCCTCCTCGGCCTCGCCACCGGTCTGTTGGCCCCCGCCGATTCAATCGCCAGCAAAATCCTCATCGGCTGGAACGCC GGTGTCTGGACTTACCTGATCCTGATGTTCTGGCTGACCGTGCTCGCCAAGGCCCCGGACGTCCGCCGTATTGCCGAGATCGAAGACGAGAACGCAGGGC TGGTGCTGTTCGTGGTGTGCATCGCCGCGCTGGCAAGCCTGGCCACCATCACCTTTGAACTGGCCGGCAGCAAAGATCTGGATAACACACACAAATTGAT
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MPQFFIDRPVFAWVVALFILLAGALAIPQLPVAQYPDVAPPQIEIYAVYPGASAQTVDESVVSLIEEELNGADHLLYFESQSSLGSATIKATFQPGTNPE LAQVDVQNRLKVVESRLPQAVNQQGLQVEKVSSGFLLLITLTSSDGKLDDVALSDYLARNVMNEIKRLDGVGKAQLYGAERAMRIWIDPQKLIAFNLTPA DVNEAIVAQNAQVSAGSIGDLPSPSTQEITATILVKGQLSTPQEFADIVLKANRDGSTVRIGDVARVEIGSQEYQFGTRLNGKPSTAVGVQLSPGANALN TATLVRAKMDELARYFPAGVEYKIPYDTSPFVKVSITKVIYTLGEAMLLVFAVMFLFLQNVRYTLIPTLVVPVALMGTFATMLALGFSINVLTMFGMVLA IGILVDDAIVVVENVERIMASEGLSPKEATRKAMKQITGAIIGITLVLVAVFIPMAFMQGSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLLKPVA KGEHHEKSGFFGWFNRRFEQLTDRYQGWVGYALKRTGRYLMIYVVLLIGLGFCFARLPSSFLPTEDQGYTITDIQLPPGATKNRTVQVAEQLEAHNAGEP GISDSVVILGFSFSGSGQNAALAFSTLKDWSERGSDDAASSIADRANAALSQIKDAMAFSVLPPPVDGLGTSSGFEFRLQDRGGLGHAILMQARTELLAA AEKSPVLMNVRESALAEAPQVQLIVDRKQANALGVSFADIGSVLSTAVGSSYINDFPNQGRMQRVVVQAEGDRRSQVDDLLKMHVRNNAGNMVPLSAFVQ ADWIQGPAQLTRYNGYPAIAISGEPSPGHSTGEAMAEIERLVAQGPKGLGQEWTGLSLQERLSGNQAPILLGLSLLVVFLCLAALYESWSIPTSVLLVVP LGVLGAVLAVTMRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKSLYDEGHDLIDATLQAARLRLRPIVMTSLAFILGVVPLAIATGASSASQQAIGTGV IGGMITATLAVIFVPVFFVVVMKLVQRFTKQH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site