Pseudomonas fluorescens SF39a, NX10_RS17355

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain SF39a contig_13, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TTCGCCTGCCCGGCTACATCGTGCCGCTGGAAGTCAGCGAGGAGGGGCGCACCACCGACTTCTTGCTGGTGCCGTATTTCGGCGCCTGCATCCACGTACC GCCACCGCCGTCGAACCAGATCGTCCATGTCAAAAGCGAACTCGGTGTGAAGCTCGATGAGCTGTATCAGCCGTATTGGGTTGAAGGACCGTTGCAGGTG AAAGCCTCGAGCAGTGAACTGGCCGATGCCGGGTATCAGATGGAGGCGGAGAAGATTTATGCGTATGAGCTGCCGGAGTGAGTCCAGGTAGTTTTGTATT GGCTGGTCTATCGTCTTCGCGAGCAGGCTCGCTCCCACAGGTGATCACATTCCAAGGTGGGAGCGAGCCTGCTCGCGAAGGGGCCGGCAAGGGTTCCACA AAACCCCGCCCCTTACTGTTTCATTGAGCTGAGTCAAAACACCGTATCAGACGGCTTCGTACCCTAGGACATCGAATTTTTATGTCCTTTCGGAGCCCCC
DNA Sequence for Gene
>NX10_RS17355
ATGAACAAGTCCTTGCTCAGCGCCCCGCTGTTTGCCCTCGCGCTCGCAGCCCCGCTCGCCCACGCCCACGAAGCCGGTGACATTCTTGTGCGCGCTGGCG CGATCACTGTCAACCCGAAGGCCGACAGCTCCAGCGTCAAGGTCGATCAGGGCCCGCTGAGCGGCACCAATCTGGGCGGCAAGGCGACCATGAGCAGCGA CACCCAACTGGGTCTGAACTTCGCTTACATGCTCACCAACAACATCGGCATCGAACTGCTGGCAGCCACGCCGTTCGAGCATGATGTCAAGCTCAAGGGC ACCGCGCTGCCCGCCGCCAACGGCAAGCTCGGCACCCTGAAGCACCTGCCGCCGACCCTCAGCGTCGTCTACTACCCGCTGGATTCGAAATCGGCTTTCC AGCCCTATGTCGGCGGCGGCATCAACTACACCTGGATCTACGACGAACACGTCGGCAGCGAAGCCAGCGCCAACGGCTTCAGCAACTTCAAGGCGAAAAA CTCCTGGGGCCTGGCCTGGCAGGTCGGCGCCGACTACATGATCACCGACAACATCATGCTCAACGCTCAAGTGCGCTACATCGATATCGATACCCGCGCG ACCGTCGAGAACAACGCCGTCGCGCCGGGCACCCGTGCGCGGGTGAATGTGGATGTCGATCCGTTCATCTACATGGTCGGCCTGGGCTATAAGTTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCTGACTTTGACCGAACGTTCACGTGGTGGTGAATGAGGCTTGGTGACGGGCAGGCACAGACCTGACGACGACCGTACGCAGTCGATCGGGGGATAACAT TCCCTCGCCACAGGAGTAGCGATATTCCGGCCGTGAAAAAGGCGCCTTATGAAGGGCGCCTTTTTCATGTCCGAAAGCTTGTTTCATCCGCGCCCGAGCA AGCGCGCCAAGCCCACACTCATCGGCGTCTGCGGCGGCATTTCAAAGCGCTGCAGCAAACGTCGGTTATCCGCTCGCGAGTGGCGGATATCGCCCGAACG CGCCGGCCCGTAGCTCACGGGCGGCAGCTCACCGACTACCGATTTCAACGCTTCGAGCATCTGCTTCAGACTCATCGCCTGATTCCAACCGACGTTGACC GCACCTTCCTGCACTTCAGGTTTTTCAAGCGCCTGCACCAGCAAATCGACCAGATCACCGACATAAAGAAAATCCCGGGTCTGCTCGCCATCGCCAAACA
Amino Acid Sequence
>outer membrane protein W
MNKSLLSAPLFALALAAPLAHAHEAGDILVRAGAITVNPKADSSSVKVDQGPLSGTNLGGKATMSSDTQLGLNFAYMLTNNIGIELLAATPFEHDVKLKG TALPAANGKLGTLKHLPPTLSVVYYPLDSKSAFQPYVGGGINYTWIYDEHVGSEASANGFSNFKAKNSWGLAWQVGADYMITDNIMLNAQVRYIDIDTRA TVENNAVAPGTRARVNVDVDPFIYMVGLGYKF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site