Pseudomonas fluorescens SF39a, NX10_RS15895
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGTCCGAACAGCTGACCTCCGCCGGTTTCGACCTGCAACACAGCGAGATCCTCGCCACCGCCGATGGCGTGGCGGTCAACCTCGGTGTGCACACCGAAG GCGCGGTGGTGCGTCAGGGCGAAACCCTGCTGGAGATCGTTCCGCAAGGCACCACCCTGGAAGTGGAAGGTCACTTACCGATCAACCTGATCGACAAGGT CGGCACGCATTTGCCGGTGGACATTCTGTTTACCGCGTTCAACCAGAGCAAAACCCCGCGCGTGCCCGGCGAAGTCAGCCTGATCTCCGCCGACCAGATG GTCGATGAGAAAACCGGCGTGCCGTATTACGTGTTGCGCAGCAGCGTCAGCGATCAGGCCATGGAAAAGCTCAACGGCCTGGTGATCAAACCCGGCATGC CGGCGGAAATGTTCGTGCGCACCGGTGAGCGTTCACTCCTCAACTACCTGTTCAAACCGCTGCTCGATCGCGCCGGTTCTGCGTTGACCGAGGAATAAGG
|
|
| DNA Sequence for Gene |
>NX10_RS15895
ATGTTCGGCTGTATGAAAAAGCTTTCAATGCTGGGTGCCGCGATGATGCTGCTCGCGAGTCACTCGGCAGTCGCGGCCATGGGGCCATTCGAGATTTACG AACAGGCGTTGCGCAACGATCCGGTGTTCCTTGGCGCGATCAAGGAGCGTGATGCCGGCCTTGAAAACCGTGTGATTGGCCGCGCCGGGCTGCTGCCTCG GATCGGCTACACCTACAACAAGGGCCGCAACTCGTCCAAGGCTACGTCTCTGGATGATCGCGCGCGCAACCGCACCGATGAGCGCAACTACAACAGTTAC GGCTCGGCGCTGACGGTGCAGCAACCGCTGCTCGATTACGAGGCTTATGCGGCGTATCGCAAAGGTGTCGCGCAGTCGTTGTTTGCCGACGAAGCCTTTC GCGGCAAGAGTCAGGAGCTGTTGGTGCGCGTGCTGGACAACTACACCAAAGCCTTGTTCGCCCAAGACCAGATCGACATCGCCCAGGCGAAGAAGAAGGC TTACGAGCAACAGTTCCAGCAGAACGAACACATGTTCAAGCAGGGCGAGGGTACGCGCACCGATATTCTCGAAGCCGAGTCGCGCTATGAGCTGGCGACT GCCGAGGAAATCGAAGCGCGTAACGAGCAGGATGCGGCCTTGCGCGAACTTGGCGCGCTGGTGGGCGTGCCGGCGGTGGATATCGGCGATCTGGCGCCGC TTGGTCAGCAATTCCAGACCTTCACGCTGCAACCGGCGAACTTCGACACCTGGCATGAACTGGCGATCAGCAACAACCCGAACCTCGCTTCGCAACGTCA GGCCGTAGAAGTGGCGCGCTACGAAGTCGAGCGCAACCGCGCCGGGCATCTGCCGAAAGTCAGTGCCTACGCCTCGATGCGCGACAACGAGTCCGAAAGC GGCAACACCTATAACCAGCGCTACGAAACCAACACCATTGGCCTTGAAGTCAGCGTGCCGCTGTACGCCGGCGGTGGCGTGTCGGCCTCGACGCGCCAGG CCAGCCGCACCATGGAACAGGCTGAGTACGAACTGGATGGCAAAACCCGCGAAACCTTGATCGAACTGCGCCGACAGTTCAGTGCCTGCCTGTCCGGGGT GAGCAAATTGCGCGCTTATCAGAAGGCCTTGAAGTCGGCCGAGGCGCTGGTGGTCTCGACCCGACAAAGCATTCTGGGCGGCGAACGCACCAATCTCGAT GCGTTGAATGCCGAGCAGCAACTGTTCACCACCCGCCGCGACCTGGCCCAGGCGCGTTACGACTACCTGATGGCCTGGACCAAATTGCATTACTACGCCG GGACGCTGAATGAGCAGGATCTGGCGCGGGTAGACGAAGCATTTGTGGTCGCGCAACAGCCCTCACCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTCTCTCCCAGAGGCAGAGGGGACTGACCGAGTGGCCTGCGATAGCCGCATCGACCAGAACGACCGAGCCGGACGCAGGTTGTGACATCAACACAAATCG GCTCCCTCTCCTCGGGGAGAGGGCTGGGGTGAGGGGAAGGGGCGACACCGCAATTCAGCCCTGAACAAAACAACAAAAACGTGAGTGATGAACATGGACG TACGCATCAAGCTGATTTCGGTCGGTACCCTGTTGCTTGTAATTTCTGCAAACCAGGTTCAGGCGCAATACCTGGAACCCGGCCAGCCCGGCGATCCCTC CAGTTGGCGCAGCGCCGAGTTCCTGCGTGACTGGGGCCTGGAACGCATGCAGGCCGATCAGGCCTACGCCGCCGGCGTCACCGGCAAGGGCGTGAAAATC GGCGCGCTCGATTCCGGTTTCGATGTCGCCCACCCGGAATTCTCCGCCGATCGCTATCACCCGGTCTCCGCCAGCGGCAGCTACGTCGATGGCTCAGTGT
|
|
| Amino Acid Sequence |
>peptidase
MFGCMKKLSMLGAAMMLLASHSAVAAMGPFEIYEQALRNDPVFLGAIKERDAGLENRVIGRAGLLPRIGYTYNKGRNSSKATSLDDRARNRTDERNYNSY GSALTVQQPLLDYEAYAAYRKGVAQSLFADEAFRGKSQELLVRVLDNYTKALFAQDQIDIAQAKKKAYEQQFQQNEHMFKQGEGTRTDILEAESRYELAT AEEIEARNEQDAALRELGALVGVPAVDIGDLAPLGQQFQTFTLQPANFDTWHELAISNNPNLASQRQAVEVARYEVERNRAGHLPKVSAYASMRDNESES GNTYNQRYETNTIGLEVSVPLYAGGGVSASTRQASRTMEQAEYELDGKTRETLIELRRQFSACLSGVSKLRAYQKALKSAEALVVSTRQSILGGERTNLD ALNAEQQLFTTRRDLAQARYDYLMAWTKLHYYAGTLNEQDLARVDEAFVVAQQPSP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|