Pseudomonas fluorescens SF39a, NX10_RS00360
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain SF39a contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTCCGGGTCGAGGGCAAAGCATGAAGTGCTCGGCTCCGGCAGGCCCAGGCCGATGGCGTAGCTGAAGTCCTCGCCGGCGAATCCCAGGCGCAACCTTTT CACGCCATGGCGCACGGTCGGCTCGATCGCCACCTCACCGTTGCGCATGCGTCGACTGATGGTTTCCGGTCCGGCCCAGAACGTGGAGTCCAGCCCGCCT TCACGCGCCAGCGCGTTGACCACGCCGCCCTGCGCGGTTTCGGCCAGCAGGCGCAAGGCGCGGTAGAGGTTGGACTTGCCGCTGCCGTTGGGCCCGGTAA TCAGGTTCAGGCGCCCGAGCGGAATCACCAGTTTGTTGATCGAGCGGTAATTGGCCACGGCCAAGGTATGAAGCATGGAATTCCCTCTCTTCGGCAGCTT CCACACGGAAATGTTGTGATCGCTCAGGCGAACGTTGAACCCTGTTCTAAGCTCACAGTCGTATCGTCACTTGCACGTTCGTACACAGGAAGGAGTCTGC
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| DNA Sequence for Gene |
>NX10_RS00360
ATGGCAAGTCCCGGAATGAAAACAGCGGTCATGCTGAGTCTGTTCACTTTGCTCACCGCTTGCGGCGACAAGAAACCTGCTCAGGAATACCTGCCGCGGG TTTTTGTCCAAGAGGTCGAGCCGGCCAACTACGCCGCCGCGGTGACCCTCACCGGTGATGTGCAGGCGCGAGTGCAGACGCAGTTGTCGTTCCGCGTCGG CGGCAAGATCATCCAGCGCATGGTCGACGTCGGCGACCGCGTCACCGCCAAACAGGTGCTGGCCAAACTCGATCCTAAAGATCTGCAAACCAACGTCGAT TCCGCTCAAGCCCAGGTCGTCGCTGAACAGGCCCGCGTAAAACAAGCGGCGGCCGCTTTCGTGCGTCAGCAAAAACTCTTGCCCAAGGGCTACACCAGCC AGAGCGAATACGATTCGGCGCAAGCGGCGCTACGCAGCAGCCAGAGCGCATTGAGCGCGGCGCAGGCGCAATTGGCCAACGCCAGGGACCAGCTCAGCTA CACCTCGCTGATCGCCGATGCGCCGGGCGTGATCACCGAACGCCAGGCCGAAGTCGGCCAGGTGGTGCAGGCCACCGCGCCGATTTTCAGCCTCGCCCGT GATGGCGACCGCGACGCGGTGTTCAATGTCTACGAATCGCTGCTGGCCGAGCGTCCGTCCGATCGTTCGATCGTGGTCAGCCTGCTCGACAATCCCGAGA TCAAAACCACCGGCACCGTGCGTGAGATCACGCCATCGGTGTCGGCGCAATCGGGCACCGTGCAGGTCAAGGTCAGCCTCGACAAGCTGCCGCCGGGCAT GCAGCTCGGTTCGGTGGTCAGTGCCACCGCCAAGGGCACCGGCAAATCGGCGGTGGAACTGCCCTGGTCGGCGCTGACAAAAAACATCAGCGACCCGGCG GTGTGGCTGGTCGATGACAAAGGCGAAGCGCAGTTGCATACGGTCACGGTCGGTCGCTATCTGACCGGCAAAGTGATCATCAGCGAAGGCCTCAAGGGCG GCGAGAAAGTCATCGTCGCCGGCGGTCAGTTGCTGCACCCCGGCATGAAAGTCGAGATTGCCGAAAACACCTACAAGGATCTGCAACCGGGAGCGCAGCC ATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGCCTCGGCCTGTTGTGCATGGCGCTGCTGCTGGGCGCCTGCTCGGAAAAGGAAACACCGCCGGAACCGGTACGCCCGGTGCTGTCGGTCACGGTCAA AGCGCTGAATGAAGAAAGCCTCGGGCGCTTCGCCGGGAGCATTCAGGCGCGCTATGAAAGCAACACCGGTTTCCGCGTCGGCGGACGCATCGCCAGCCGT AACGTCGATGTCGGCGCCGAGGTGCAGAAGGGCACCCTGCTCGCCACCCTCGATCCGTCCGATCAGCAGAACCAGTTGCGTTCGGCCCAAGGCGATCTGG CGAGGATCCAGGCGCAACTGATCAACGCCCAGGCCAATGCACGTCGGCAGCAAGCGCTGTTTGATCGCGGCGTCGGTGCGCAGGCGCAACTGGACGTTGC CAACACGGACCTGAAAACCACCCAGGCTTCGCTCGATCAGGCTCGGGCGGCGGTCAGCCAGAGCAAGGATCAACTGAGCTACACCGAGCTACGCTCTGAT
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| Amino Acid Sequence |
>RND transporter
MASPGMKTAVMLSLFTLLTACGDKKPAQEYLPRVFVQEVEPANYAAAVTLTGDVQARVQTQLSFRVGGKIIQRMVDVGDRVTAKQVLAKLDPKDLQTNVD SAQAQVVAEQARVKQAAAAFVRQQKLLPKGYTSQSEYDSAQAALRSSQSALSAAQAQLANARDQLSYTSLIADAPGVITERQAEVGQVVQATAPIFSLAR DGDRDAVFNVYESLLAERPSDRSIVVSLLDNPEIKTTGTVREITPSVSAQSGTVQVKVSLDKLPPGMQLGSVVSATAKGTGKSAVELPWSALTKNISDPA VWLVDDKGEAQLHTVTVGRYLTGKVIISEGLKGGEKVIVAGGQLLHPGMKVEIAENTYKDLQPGAQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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