Pseudomonas fluorescens PA4C2, P909_RS00465

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015074 DNA integration
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13683
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 110 284 2.7E-29
Pfam PF13276 HTH-like domain IPR025948 HTH-like domain 47 98 5.3E-8
Pfam PF13683 Integrase core domain IPR001584 Integrase, catalytic core 200 265 1.7E-33
PANTHER PTHR47515 LOW CALCIUM RESPONSE LOCUS PROTEIN T - - 2 269 1.1E-108
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 109 267 4.68E-40
NCBIfam NF033516 NCBIFAM: IS3 family transposase IPR048020 IS3 transposase 7 267 6.4E-68

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.