Pseudomonas fluorescens PA4C2, P909_RS24730
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PA4C2 scaffold3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGGGCTGGCCATCGTCAAGGCGATTGCGTTGATGCATGGGGGGGATGTGTTTGTGCGCAGTGAGGGCGGTGGCAATACGTTTGGGATCACCCTGCCGGT CTAAATCGTAAGGACGCTTGAGTCAAATGTGGGAGCGGGCTTGCTCGCGAATTCGGTGTATCAGTCAATATATCTGTAACTGACACACCGAAGTCGCGAG CAAGCCCGCTCCCACACTTAGATCGACGTACATCCGCACTGTTGCGGTTTGGGCAATAGTTATTATCTTGTTACACTCTGTATCGCACCGCTCGCCTGCG TTACTTTGACGCATCGATGAGCGCGACGGCAAAGACAGCTGACCCGCTTACCCGAATTTCCCTCGACTTTTTTCCAGGGCTCTACACTGGGAATCTGTCT TAAAGCCGCTGACTTTCAGCGGCTTTTTTTTGCCGTAAAAAAAGGCCGGGCACCCCCTCACGACACTGGCCGTTATGGATTGACCAAAGGAGCTTTACCG
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| DNA Sequence for Gene |
>P909_RS24730
GTGAAGAACTCGCTGACGTTCACCCCGTTATTCCTCGCGATTGCAGCAACGATCGCCCCACTGGCCCACGCGGCAGACACTCCCCCCAACGACGGTTTCG TCGACGGCTCCCACCTCACGATCAACACCCGCAACTACTACATGAACCGCGACCGGCGCGATATTCATACCGATGACAGCAAGGAATGGGGCCAGGGCTT TATCGGCACCTTCGAATCCGGCTACACCCAGGGCACCGTCGGCTTCGGCCTGGACGTCAATGCCATGCTCGGCCTCAAGCTCGACGGCGGTGGCGGTACG GATGGTTCCAGCATCCTTCCGTATGGCAGCGGCAACGGCAAGGCGCCGGGTTCGTTCTCGACGGCCGGCGGCACCTTGAAGCTGCGCGCCTTCGACACCG AACTGAAAGCAGGCGACCTGTTCCTCAACAACCCGGTGATCGCCGGCGGCATGACGCGCATGTTGCCGCAGACCTTCCGTGGCGTGAGCCTGACCAACCA CAGCTTCGACGGCTGGATGTTCGAAGGCGGCCAGGCCAGTTTCACCAAGCTCTACAACCAGAGCGGCCACCGGCGCATCGGCACCAGCTACGGCACGCTG CCCGCCAACACCGACAGCCAGCACCTGGACTGGGCTGGCGTGTCGTTCAGCGCGATTGAGGGGCTGACCAGCAACCTGTACGCCTCCGAACTCAAGGACG TCTGGCACCAGTATTACTACGACCTGGAATACACCTACGCCCTGAACGACCTGGTCAGCCTGACCCCCGGCCTGCACTACTACCACACCCAGGACACCGG CCAATCGCTGCTGGGCGATATCGACAACAACACCTACAGCCTGCATTTCACCGTGGGGGTGGGCAACCACAGCGTCACGGCGACTTATCAGCGGGTCAAT GGCAACACGCCGTTCGACTACATCACCCAGGGCGACAGCGTATACCTGGACAACTCCCAGCAGTACTCGGATTTCAACGGCCCCAACGAGCGCTCCTGGA AGCTCAAGTACGCGTACGATTTTGCCGGCCTCGGCGTGCCCGGCCTGACCTCCGCCGTGTCCTACATCAGCGGCAAGACCGACCTGACCAAGGTCGACCC CAACAGTCGCGGCTACAGCAACTGGTACAGCGCCGATGGCAAGGACGCCAAGCACTGGGAGCGCGATATCGACCTGAAATATGTGGTGCAGGGCGGCAAG GCCAAGGACTTGGCCGTGCGCCTGCAATGGGCGACCAACCGCGGCAGCAATGGCTACTCGGCGGTGGACCGCGATGTGGATGAGTACCGCGTGATCGTGG ACTACCCGATCAACGTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATACAGGTAGGAGCGAGCTTGCTCGCGAAAAACGTTAACGATAACGCCTGCTTCCTGAATAAACGCGGCGTCTGTGAGTTTTTCGCGAGCAAGCTCGCTC CTACAGCCATATTCAAGAGTTGCTACTACGCTAAGGGCATTCTCAACGCAAAAGTGTGCCCGATGAGCTCAAGCCCTACCCGCCCCAACCGCCGCCCGGA GCGCTTGCTGATCCTGGGCAGCACGCTCACGGTGTTGCTGATCGTGGGGGTCGTCACTGCGCTGCTGATTCGTGAACATGCCAATACCCTGCAGACGGCC AAACGCACCGCCAATACCATCACGCAATTGATCGACGCTGACGTGCTGCGCAATGTCGAACTGTACGACATGGCCCTCAAAGGCTTGATCACCGCCACCG AGCGCACTGACCTGCAGGACGTCTCAGAAAGTATTCGCCACCTGGTGCTCTTTGATCGTTCCGCCGCGGCGCCCTACAAGGGCGATATCCTGCTGTTGGA
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| Amino Acid Sequence |
>porin
MKNSLTFTPLFLAIAATIAPLAHAADTPPNDGFVDGSHLTINTRNYYMNRDRRDIHTDDSKEWGQGFIGTFESGYTQGTVGFGLDVNAMLGLKLDGGGGT DGSSILPYGSGNGKAPGSFSTAGGTLKLRAFDTELKAGDLFLNNPVIAGGMTRMLPQTFRGVSLTNHSFDGWMFEGGQASFTKLYNQSGHRRIGTSYGTL PANTDSQHLDWAGVSFSAIEGLTSNLYASELKDVWHQYYYDLEYTYALNDLVSLTPGLHYYHTQDTGQSLLGDIDNNTYSLHFTVGVGNHSVTATYQRVN GNTPFDYITQGDSVYLDNSQQYSDFNGPNERSWKLKYAYDFAGLGVPGLTSAVSYISGKTDLTKVDPNSRGYSNWYSADGKDAKHWERDIDLKYVVQGGK AKDLAVRLQWATNRGSNGYSAVDRDVDEYRVIVDYPINVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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