Pseudomonas fluorescens PA4C2, P909_RS20560
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PA4C2 scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCTGCGCAGAAGACTCAAAGCCGCCACAAAAGCACTTTACGAACGGGCCACTGAAACCGTGGCCAAGCTCATCAAGCGACAGCCTCCGACCATTGCCCA TGTCGATTGGCTCATTAACCACCGCGAAATTGCGATCAAAAAGATCATGACCCGCCAGCCCCTCAAGGGCGCCACTTGGAGCTATCAAGATGAGTATGCG GTCATTGATCTGTCTACCAGCAAACCTCTCTGGTATGCGCATTTCCAATACTCGAGCGCCCACGCTTCACTCAATAGATTTCTTCACGCACGACTCAAAA CCCCAGCAGAACAACAGCTCAAAGAGGTAGCTGACACGCTCACCGGCTTAACCGCAGAGCAACAGCTCGACTACTACCGCAGTTCCATCAACCTGACCCA AGCCCAGCGCTTGTTTTTCCCGCCAGAGGTCTATTGACGGCGCGCTCGCGCAACGGCACATAACTTGCTCCAGCCTGACAAACCCAGGCTGGACTCCATC
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| DNA Sequence for Gene |
>P909_RS20560
ATGCTGCATTCACACCTGACCACCCTCAATGCGGTCTCGCTGATCCTGGAGACGTTCAAGCCCGACGGCATCTGCAGCCAGACCCTGCTGGCTGGCAGTG GCATCGCCAGTGCCGACCTGAGCCGCGCCGACACGCGTATTACCACTCATCAGGAAATGCGCGTATGCGCCAACGCCGTGGCATTGCGTCGGGACATCGG CCTGGAACTGGGCCGGCGCATGCATGTGTCGTCCTACGGCATGCTCGGTTATGCACTGCTCACCAGTGCCACCTTCGGTGACGCTTTGCGCCTGGCCCTG CGCTACCCGGCGCTGTTGGGAACACTTTTTGAACTGAGCCTGGAAGAGGATGGCCAGCGCGTCTGGTTCAGCGCCACTGACTACCGCGAAGACCCAGCCC TGGGCGCCTTCAATGTCGAGTTCTGCCTGCTCTCGCTGAAAGTCATCTGCGACGACCTGCTCGGCCAGCCGTTGCCATTGCTCGGTGCACGCTTTGAATA CCCAGCGCCCGACTATCGAGCACGCTACGCCGAACGCTTCGACTGCCCGCTGCAATTTGGCGCCGCCACTAACGCCTTTGCCTTCGACCGTGACTGGCTC GACCAGCCCCTGCCGCTGGCCGATGCCGTCACCCACTGCGCCATGGTGGAACGCTGCCGTCGGCAGAACGCCGAGTTCACCGGTCGCCAGGCCTGGCTGG GGCGCGTGCGCCTGTTACTGGCCGCGCAATTAAATGCCGCTCCGGGCCTGGATGGACTGGCAGGGCAAATGAACTGTTCGGCACGCACCCTGCGCCGGCA TTTGCATGATCTGGGGTGCAGCTATCAGGAGTTGCTCGACGAGCTACGCTTCGAACGCGCCAAGCAGTTACTGGGGGAGGATGAACTGCCGATCTACCGC ATCGCCGAACAACTGGGCTTTAGCGAGACCGCCAGCTTCAGGCATGCGTTCGTGCGCTGGAGCGGTGTGGCGCCGAGTCAGTTCAGGCCCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAAGGGGCGAATAGCGGACAAACACATTGGCCATATCGATCCCCTTTTGGCCGCTCCTGCCGTTCTCCAAACCCCGGCGCCTGGCAACACTGCATGGCAT ACCCCTGAGCCTTTGGAGAACAACAACATGCTGACGATCTACTCGGACGATCATCATTTGCACCATGGCCGTTGTGAGCTGATGGACGGGCAACTGATGC CCTGCTTCGAAATGCCCTCGCGCGCCGACCATGTACTGCAACGCGCCAAAGAGCGGGAGCTGGGGCCGGTGCAAGCGCCGCAGGATTTCGGCCTGGCGCC GCTGCAACGTATCCACAGCCGCGACTACCTCGACTTCTTCAAAGACGCCTGGCAGCGCTGGACCGAATACGGCCAGGACGGCGACCTGCTGCCCTACACC TGGCCGGCGCGCACGTTGCGCCGCGTGCTGCCCACCAGCCTGCACGGCCAGTTGGGCTATTACAGTTTCGACGGTGGCGCGCCAATCACCGCAGGCACTT
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| Amino Acid Sequence |
>AraC family transcriptional regulator
MLHSHLTTLNAVSLILETFKPDGICSQTLLAGSGIASADLSRADTRITTHQEMRVCANAVALRRDIGLELGRRMHVSSYGMLGYALLTSATFGDALRLAL RYPALLGTLFELSLEEDGQRVWFSATDYREDPALGAFNVEFCLLSLKVICDDLLGQPLPLLGARFEYPAPDYRARYAERFDCPLQFGAATNAFAFDRDWL DQPLPLADAVTHCAMVERCRRQNAEFTGRQAWLGRVRLLLAAQLNAAPGLDGLAGQMNCSARTLRRHLHDLGCSYQELLDELRFERAKQLLGEDELPIYR IAEQLGFSETASFRHAFVRWSGVAPSQFRP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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