Pseudomonas fluorescens PA4C2, P909_RS20320
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1116 | 1138 | 0.0041 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1220 | 1240 | 1.4E-13 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1000 | 1027 | - |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 880 | 1331 | 3.2E-81 |
| Gene3D | G3DSA:2.60.200.60 | - | - | - | 157 | 225 | 2.4E-14 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 712 | 747 | 1.3E-7 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 1119 | 1156 | 5.3E-6 |
| PANTHER | PTHR32305 | - | - | - | 750 | 1331 | 7.3E-35 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 492 | 528 | 2.3E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 732 | 772 | 6.5E-4 |
| Pfam | PF03527 | RHS protein | IPR001826 | RHS protein | 1226 | 1262 | 3.2E-14 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 458 | 761 | 3.1E-35 |
| NCBIfam | TIGR03696 | JCVI: RHS repeat-associated core domain | IPR022385 | Rhs repeat-associated core | 1253 | 1331 | 2.1E-24 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 296 | 370 | 2.1E-22 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1300 | 1319 | 1.4E-13 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 775 | 807 | 0.0083 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 888 | 919 | 0.0032 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 673 | 702 | 9.9E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 615 | 645 | 0.0072 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 1140 | 1171 | 6.6E-6 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1277 | 1297 | 1.4E-13 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 816 | 854 | 4.8E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 657 | 688 | 2.3E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 690 | 730 | 6.6E-4 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 725 | 751 | 4.6E-4 |
| CDD | cd14742 | PAAR_RHS | - | - | 104 | 225 | 1.70848E-30 |
| Pfam | PF05488 | PAAR motif | IPR008727 | PAAR motif | 169 | 212 | 1.5E-9 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 584 | 624 | 7.1E-4 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 753 | 794 | 0.0028 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1140 | 1171 | 3.6E-7 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.