Pseudomonas fluorescens PA4C2, P909_RS20280

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens PA4C2 scaffold1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CAAAGTTCTCAGAAATTCATCGCGCGCAACCGTGCGCCTCGAGTGCAGATCGAGTACGACGTCGAGCTTTACGGCGCCGAGAAAAAGGTCCAGCTGCCCT TCGTAATGGGCGTGATGGCCGACCTCGCCGGCAAGCCTGCCGAGCCGCTGGCACCCGTGGCCGACCGCAAGTTCCTTGAGGTGGACGTCGACAACTTCGA CTCGCGCCTCAAGGCCATGCAGCCACGCGTCGCGTTCCACGTACCCAATGAGCTGACCGGCGAAGGCAACCTGAGCCTGGACATCACCTTCGAAAGCATG GACGACTTCAGCCCGGCCGCTGTGGCGCGCAAGGTCGATTCCCTGAACCAGCTGCTCGAAGCCCGCACCCAATTGGCCAACTTGCTGACCTACATGGACG GCAAGACTGGCGCTGAAGAAATCATCATGAAGGCGATCAAGGACCCGGCATTGCTTCAGGCACTTGCCAGTGCGCCCAAGCCTGCAGGGGAGCAGTAATC
DNA Sequence for Gene
>P909_RS20280
ATGACGGACAATACCGCCCGCGAAGGCAGCCAGATCCTGGGTACCACCGAAGAAGCCAGCGAGTTCGCGAACCTGCTGCTGCAAGAATTCAAACCCAAGA CCGAGCGTGCCCGCGAAGCCGTTGAAACCGCGGTGCGCACCCTGGCTGAACAGGCCCTGGCGCAAACCGACCTGGTGTCCAACGACGCGATCAAGTCGAT CGAATCGATCATCGCCGCCATCGACGCCAAGCTCACCGCCCAGGTCAACCAGATCATCCACCACCAGGATTTCCAACAACTGGAAAGCGCCTGGCGTGGC CTGCATTACCTGGTCAATAACACCGAGAGCGATGAGCAACTGAAGATTCGCGTGCTCAACATCTCCAAGCCAGACCTGCACAAGACCCTGAAGAAATTCA AGGGCACTGCATGGGACCAGAGCCCGATCTTCAAGAAGATGTACGAAGAAGAATACGGCCAGTTCGGTGGCGAGCCTTACGGCTGCCTGGTGGGTGACTA CTACTTCGACCAGTCGCCGCCCGATGTGGAACTGCTGGGCGAGCTGTCGAAAGTCTGCGCCGCCATGCACTCGCCGTTCATCGCTGCGGCCTCGCCGACT GTGATGGGCATGGGCTCGTGGCAGGAACTGTCGAACCCACGCGACCTGACCAAGATCTTCACCACCCCGGAATACGCCGGCTGGCGCTCGCTGCGTGAAT CGGAAGACTCGCGCTACATCGGCCTGACCATGCCGCGCTTCCTGGCACGCCTGCCGTACGGCGCCAAGACCGATCCGGTGGAAGCCTTCGCTTTCGAAGA AAACACCGACGGCGCCGACAGCTCCAAGTACACCTGGGCCAACGCCGCCTACGCCATGGCGGTGAACATTAACCGTTCGTTCAAGCACTACGGCTGGTGC TCGCGTATCCGTGGCATCGAGTCTGGCGGTGAGGTGGAAAACCTGCCGGCCCACACGTTCCCTACCGATGACGGTGGCGTGGACATGAAGTGCCCGACCG AAATCGCCATCAGCGACCGCCGTGAAGCGGAACTGGCGAAGAACGGTTTCATGCCGCTGCTGCACAAGAAAAACACCGACTTCGCGGCGTTCATTGGCGC CCAGTCGCTGCAGAAACCTGCCGAATACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCCGCGCGCCTGCCGTACCTGTTCGCCACGTGCCGTTTC GCTCACTACTTGAAGTGCATCGTGCGCGACAAGGTCGGCTCCTTCAAAGAGAAGGACGAAATGCAGCGCTGGTTGCAGGACTGGATCCTCAACTACGTCG ACGGCGACCCGGCACACTCCACCGAAACCACCAAGGCCCAGCATCCGTTGGCAGCCGCCGAAGTGATCGTGGAAGAAGTCGAAGGCAACCCGGGGTATTA CAACTCCAAGTTCTACCTGCGCCCGCACTATCAGCTTGAAGGGCTGACGGTGTCGTTGCGTTTGGTATCGAAGCTGCCTTCGGCAAAAAGCGCCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTAACCGGACCGGCTCGCTTCCTGTAGGAGCGAGCTTGCTCGCGAAAAACTTAAAGACGCCGCGCTCATTCAGGATGCCAGCGTCATCGTTAACGACCTT CGCGAGCAAGCTCGCTCCTACAGGGGTCGGGGACGTCAACACATTCGTGGCCTGAGCCACACAGGGAGAAAACATGGCTGTTGATATTTTCATCAAGATC GGCGACATCAAGGGCGAGTCCATGGACAAGGCCCACAAGGACGAAATCGATGTGTTGAACTGGAGCTGGGGCATGTCCCAGTCCGGCAACATGCACGTCG GCGGTGGCGGGGGTGCGGGCAAGGTGAATATCCAGGACCTGTCGCTGACCAAATACGTCGACAAGGCTTCGCCCAACCTGATGATGCACTGCGCCAGCGG CAAGCACATCGACAAGGTCAAGCTGACCGTGCGCAAGGCCGGTGGCGAGAGCCAGGTCGAGTACATGGTGATCAACCTGGAAGAAGTGCTGGTCACCTCC
Amino Acid Sequence
>type VI secretion protein EvpB
MTDNTAREGSQILGTTEEASEFANLLLQEFKPKTERAREAVETAVRTLAEQALAQTDLVSNDAIKSIESIIAAIDAKLTAQVNQIIHHQDFQQLESAWRG LHYLVNNTESDEQLKIRVLNISKPDLHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGELSKVCAAMHSPFIAAASPT VMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIGLTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHYGWC SRIRGIESGGEVENLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRF AHYLKCIVRDKVGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVIVEEVEGNPGYYNSKFYLRPHYQLEGLTVSLRLVSKLPSAKSA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site