Pseudomonas fluorescens PA4C2, P909_RS20220
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PA4C2 scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGGCGCGCTGTGGCGTGCTGACCGGCAATCGGCGCTCGCCGCGTTGCGCAGTCAGCACCTGGGCTATGTGCCGCAGACCGGAGGCTTGCTGGGGTTTC TGGATGTGCGCGGCAATATCGCGCTGTCGCGCCAACTGCTGGGCTTGCAGGACGACGGCCACGTGGCGCGCCTGGCTGAGCAGTTGCAGATCAGCGATCA GTTGGCCAAGCGCCCGGCGGCGTTGTCGGTGGGCCAACGCCAGCGGGTCAGCTGCGCGCGGGCCCTGGCCCATGGGCCGCAACTGGTGCTGGCTGATGAG CCGACGGCGTCCCTGGACCCGCTCAACGCCGAGCGCGTGATGCAGGCGTTGCTGGCCCAGGCCCGCGAACACCGTGCGGCCTGTGTGATCGCCACCCATG ATGAACCGCTGGCTCGCGCCAGTGGCTTGCAGGTGCGGCGTATCCGTTGCCAGCGCGACCCAGACGGCGGCGTCACCGCAACCCTCGGGGAGGCGTGCTG
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| DNA Sequence for Gene |
>P909_RS20220
ATGCGCATCGGCCTGGTTGCCTCGCTCGCCTGGCAGGACTACCGCAACGATGGGTGGCTGTCGGCCTGTTCGGTGTTGGCATTGGTGGCGGTTATCGCGC CATTGCTGGTGTTATTCGGGCTGAAATTTGGACTGGTTAGCAGTTTGACCGAACGCTTGGAGACCGACCCCGCCAGCCGTGAAATCATCCCGTTGGGCGG TGGTCGATTCAGTGCGGCGTTTATCGCGCAACTGGGTGAGCGCAGCGATGTGGCCTTTGCTGTGCCGCGCACACGGCAGATTGCGGCCACGGCGCAGGTG GGCACCTTGACCCTGGAAATGCTGCCGACTGCCGCAGGCGACCCGTTGTTGGCAGGCTTGCCGCTGCCCCACGGCCTGGACCAGATCGTGCTCAGCCATA CCGCCGCCGAAAAGCTCGCGGCAAGGCCCGGTGACTGGCTGGAAACCCGCTTTGCGCGGCAAGTGGCGGGGCGCGTCGAGGCCCAGCGCACGCGGTTGCA GGTGCTGGCGGTGTTGCCGCTGGAAGCCTTCGCTCGCGAGGGCCTGTTTGCCGATCTGGCGCTGCTGGAAGCGGCAGAAGATTACCGCGATGGCCGTGCC GTGCCGGCATTGGGTTGGGCCGGTGACGCGGCGAGCGTGAGCGAACAGCGTATCTACCCGGCGTTTCGCCTGTATGCGCGCAGCCTCAGTGATGTGGAAC CGTTGCGGGTGTATTTCGCCGGGCAGAACCTGTTGGTTTCAACCCAGGCGCACACCATCGCTCAAGTGCAATCGTTGAGCCGCAACCTGTCGATTGTGTT CTGGATCATCGCCGGGCTGGCGTTGGCCGGGGCGTTTGCGGCGATCTTCGCGGGCACCCTGGCGGCGGTGGCGCGCAAGCATCGGGAACTCTCGGTGTTG CGCCTGCTGGGGTTTTCCACCGCCGCGTTGTTGCTGTTTGTGCTGCTGCAAGCGCTCTACAGCGCGGGTTTTGCCGCTGTGCTCAGCGTTGGGCTGTATG GCCTGGCCGAGGCCGCGTTGAACAAGCTTTTTGTGCAGGTGCCGGGCGAGTACGCCAGCCACCTGTTGGCGCGCCATTACGGCCTGGCCCTGGTGGCGGT GCTCGGCGTCAGTGCCGTGGCGGCCGCCTGTGGTGGTTGGCGGGTGGCACGTATCCAGGCTTCTGAAGGAATCAGAGATGTATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATTACTGGGCGCCTGCGTGGCGCTGAGCCTGGCCTCGCTGGCCTGGGCCGATGAGGCAAGTGACAAGCTCGACAACCCCAAGCCGTTGCCGGACGACGTA AGCCTGCCGCTGCCCTGCGAAGGCAACATGGTGTTCCGCTACGCCTACATCCTGGCCCAGGGCACCCTGGATGACCGTGAAATCAACCTGGGCTACCCCT TTGCCGAAGGCGAGGCGGGTTATCAGCAGTCGTTTATTTCCGGCTACCGCCGCGACTTCATCAACGGCCAGTTCACGCTCAAGGACTTGCCCAAAGACTG GAGCAAGGTCATCGCGCCGCAGATGCCGAAGACCGAGGCAAAAACTCCGCTCAAGCCGATGCTGTACTTCATCGGCAAGTACGAAGTGACCGCCCGCCAA TACGCCCAGGTGATGGCCCAGGCGCAATCCCTGGCCAGCGGTGAACCGGCGCCGGCGTGTGACGCGCCCACGGGCATGGCCGGGCGTTTGCCCAAGGTGA
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| Amino Acid Sequence |
>membrane protein
MRIGLVASLAWQDYRNDGWLSACSVLALVAVIAPLLVLFGLKFGLVSSLTERLETDPASREIIPLGGGRFSAAFIAQLGERSDVAFAVPRTRQIAATAQV GTLTLEMLPTAAGDPLLAGLPLPHGLDQIVLSHTAAEKLAARPGDWLETRFARQVAGRVEAQRTRLQVLAVLPLEAFAREGLFADLALLEAAEDYRDGRA VPALGWAGDAASVSEQRIYPAFRLYARSLSDVEPLRVYFAGQNLLVSTQAHTIAQVQSLSRNLSIVFWIIAGLALAGAFAAIFAGTLAAVARKHRELSVL RLLGFSTAALLLFVLLQALYSAGFAAVLSVGLYGLAEAALNKLFVQVPGEYASHLLARHYGLALVAVLGVSAVAAACGGWRVARIQASEGIRDV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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