Strain | Pseudomonas fluorescens PA4C2 scaffold1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
AACCCTTGATATACGGGCTCCCGCAAGATTGGCATGCACCTTGCTATAACCCTGCTAACGAACAGCAGGTCAGCCTAAAGGTTTCCGCCATGAGCATCAG CTTCGATAAAGCGCTCGGTATCCACGAACAAGCCCTGGGCTTCCGCGCCCAGCGTGCCGAAGTCCTGGCCAACAACATTGCCAACGCCGACACCCCGAAC TACAAGGCTCGGGACTTGGACTTCTCCGCTGTGCTCGCCGCACAACAGGACAAGACCAAGAACGGCACCTTCGCCTTGAATATGACCAACAGCCGTCACA TTGAAGCGCAAGGCCTGAGCAAGGGTGACGAGTCGCTGCTGTATCGCACACCGATGCAGCCGTCGATCGACCAGAACACCGTCGACGCCCAGCTGGAGCA ATCGAACTACGCCGAAAACTCGGTGAACTTCCAGGCCAGCTTCACCCTGCTCAACAGCAAATTCAAAGGGCTGATGTCAGCCCTGCGTGGAGAGTAAGCC
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DNA Sequence for Gene |
>P909_RS14065
ATGTCCCTGTCCAGTGTTTTCAATATTGCCGGCAGTGGCATGAGCGCGCAGACCACGCGTTTGAACACCGTCGCCAGTAACATCGCCAACGCCGAAACCG TCTCCTCGAGCATTGACCAGACCTATCGCGCCCGCCACCCGGTGTTCGCCACCATGTTCCAGGGGGGGCAGGCAAGCGGCAGCGATTCGTTGTTCCAGAA CCAGGACGCCGCCGGCTCCGGTGTGCAGGTGTTGGGCGTGGTCGAAGACCAGAGCAATCTGGAGGCCCGTTACGAGCCCAACCACCCGGCCGCGAACGAA AAGGGCTACGTCTACTACCCCAACGTCAACGTGGTCGAGGAAATGGCTGACATGATCTCCGCCAGTCGCTCGTTCCAGACCAACGCGGAAATGATGAACA CCGCCAAAACCATGATGCAGAAGGTTCTGACCCTGGGTCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TAAGGGGCGCCAAATAATGGCCATCGTTGATACGTCTAACAACACGGCGGTTCAGGACCTTTTCAATTCCAAGGTCAAGACCGCGACGAACAACAGCAGC GTCAGCGACGCTTCCAAGACGGCGACGGGCAATCAGTCGCTGGGCAAGGATGCGTTCCTGCAACTGCTCGTCACCCAACTGAAAAACCAGAACCCGCTGT CGCCCCAGGACAACGGCGCGTTCGTGGCGCAGCTTGCACAGTTCAGCAGCCTGGAAGGCATCAACACGCTGAACGACTCGGTGAACAACATCTCCAGCAA CTTCAGCTCGTCGCAGGCGCTGCAGGCTTCGTCGCTGGTGGGGCGCTCGATCATCATCCAGACCGACAAGGCCATGGTGGATACCAGCAAGAGCATGACC GGTTCGGTGGCAGTAACCTCGGCGGTGGGCAATGTCTCCGTCAAGATCACCGACAAAGACGGCAATGTGGTGCGCACCGTTGACATGGGCGCCCAGAGTG
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Amino Acid Sequence |
>flagellar basal body rod protein FlgC
MSLSSVFNIAGSGMSAQTTRLNTVASNIANAETVSSSIDQTYRARHPVFATMFQGGQASGSDSLFQNQDAAGSGVQVLGVVEDQSNLEARYEPNHPAANE KGYVYYPNVNVVEEMADMISASRSFQTNAEMMNTAKTMMQKVLTLGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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