Pseudomonas fluorescens PA4C2, P909_RS13930
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PA4C2 scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCCAGTCCGTGTCTGAATTGCGGTGCCTGCTGTTCACACTTTCGCGTGTCTTTCTTTTGGGGTGAGTGCACCTCGTCCGGGGGCACGGTGCCCGATGAG CTGGTGGTGCAGATCAACCCCAGCCGCGTGGCGATGATCGGCACCGACCGCAAGCCGGCACGCTGCGCCAGCCTTGAAGGTAAAGTCGGACAGGCCACCA GTTGCTCAATTTATGAGCAACGCTCCAGTGTATGCCGTGAGTTCGAGGCGTCCTGGAGCCAGGGCGTACAAAATGTCGATTGCGACGCCGCCCGTGCCGC ATTTGGCTTGGCCCCGCTGGAGGCTCCACACTTCGAACTCGACCTGCCGATCAGCGCTTAGCACCAAACGCTATGGAAGGCATATCAAAATAATTTGAGA TCAAAACGCCATTACTGATGGCAAAGCTCGAGAGACTCCTATACTCGAGCTCATAGGTCATCGCCGCTGGCAGTGACAGGGCTCTGTGACGGGATAAGCT
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| DNA Sequence for Gene |
>P909_RS13930
ATGGAATGGCTGGGGCAGCATTTTTTTACCGACCTTCCCGACAGCGGGCACTTATTGCTCAATTGCAGTCATAACCCGTTTCTGGTGTTGCTGGCGTACC TGGTCGCCTGCGCGGCGGGTTTCGGTACCCTGGACATGGCCGAACGTGTCGGCCATGTCGAAAACCCCACCGCCCGCCGCCATTGGCGCTGGCTGGGTGC GGGATGCCTGGCAGGTGGCATCTGGTCGACCCATTTCATCAGTATGCTGGCCTTCCAAGCGCCCATTGCCATTCACTACGAATTGATCTTGACCTTCGCC TCGCTGCTGATCGCTCTGATCGCTTCGTTGCTCGCCATGCAGACCCTCAGTCATACCCACCTGCGTTTTCATCAGTACCTGGTGGCTTCAGTGTGGATGG GGCTGGGTATCGCGTTGATGCACTACGTGGGCATGTCGGCCATGCGTTCCCAGGCCCAGGTGTACTTCGAAACACGGCTGTTTTTGGCCTCGGTGGCGAT TGCCATGGGCGCCAGCCTGGCGGCGTTGTTGCTGTCCAGTTACCTGCGCAATGGGGCCGGCGTGTTTCACCAACTGCTCAAATACGCCGCCAGCCTGGTG CTGGGTGCCGGGATCCTGAGCATGCACTTCACCGGCATGGCGGCCATGCAAATGCTGGTGCCCAGCGGCACGGACCTGTCGTTGCGGGCCGATGACAACC CGATTCAACTGGGCCTTTCAGTCGCGATGATCACCTTGCTGGTGATCGGCAGCAGCGTCAGCGCAGCCCTGGCCGACAAGAAGCTGCAACACAAGGAGCG CGACCTGCGCCGGGTCAACGCGCTGCTCAGCGAACTCGACCAGGCCCGCGCCTCGCTGCAACAAGTGGCCCATTTCGACGCGTTGACCAGCCTGCTCAAC CGCCGTGGTTTCAATCAGATCTTCGCGGAGAAAGTCGCGGAAAAAACCCGCACTCAGGGCATGATGGCGGTGATCTTCCTCGATATCGACCACTTCAAGC GTATCAATGACAGCCTGGGCCATGATGCCGGCGACCAGTTGCTCACGGTGCTGGCCGGGCATATCAAGGGTTCGATACGCAGCCATGAAGATGTGGTGGC ACGCTTTGGCGGCGATGAGTTTTGCATCCTGGTCAATATTCATCACCGCGACGAAGCCCGGAACATGGCCCAGCGCATCATGCAGAAGATGAAAGAACCC ATCGAACTGGCCGGCCGGCGCATGGTGATGACCACCAGCATCGGCATCAGCCTGTTTCCCGAAGACGGCCACACCTGCGAGGAACTGCTTAAAACCGCCG ACCTGGCGCTGTACCAATCCAAGGATGCCGGGCGCAATTGTCTGAACTTCTTCAGTTCCAACCTTAAAACCCGTGCCTTTCTTGAGCTGCAACTGGAAGA AGAACTGCGCGCCGCCTTGCGTACGCGCAGCCAGTTGGTGCTGTTTTATCAACCCATCTTTGACATGAAGCTGGGCAAGGTCACGCGCCTGGAAGCCCTG GTGCGCTGGCAACACCCCCAACACGGGCTGCTGGCCCCGGACCGCTTTATCGGCATTGCCGAGAACAACGGGCTGATCGCCGAACTGGACCACTGGGTAC TGCGCCAGGCCTGTCACGACCTGAGCCTGTTGTCTGACCGGGGCTACACCGAGTTGATCATGGCGGTGAACTGCTCGGCGTTGAACCTGGCGCGTGACGA ACTGGCCGATGAAATCGAAGACGCCCTGCGCTTCGCCGGCATCGGCACCAACCGCCTGGAACTGGAAGTCACTGAAAACGCGTTGATGGGCAATATCAGC AGCACCCTGGCCCTGTTGCGGCAGATTCGCGCCCTGGGTGTTTCACTGGCCATCGATGACTTCGGCACTGGCTATTCGTCGCTGGCTTACCTCAAGCGCT TGCCGCTCAACACCTTGAAGATCGATCGCTCGTTTATCCAGGACATCCCCAAATCCACCGCAGACAGTGAAATTGTCCAGGCGATTATTGGCATGGCCCA CACCCTGCACTTGCAGGTGGTCACCGAAGGGGTGGAAACCCAGGCGCAGTTCGAGCTGTTGCTCAAGCATGGCTGTGACTACATCCAGGGCTACCTGCTC AGCCCGGCGGTGCCCTTCGACGCCATCATCGGCGTGATGCAGGGGATTGCCATGCGCAATCCGCTGTACCCGCTCAGCGTGGAAACCAACAGCGAAACCC CTGCCCCCAAGGATCCCGCTACGGAACGAGTGGGTTCGCAGTCTATTGTCAGGCCGATTCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGCGTCTGCTGCCCAAAACAAGCCGTGTGCAGGGGATACACGTAGAACAAAGCGCTAGGTATCCAACCTGATAATGAACAGCTGAGAGGGCTGGACGCT ACGCCTGTTGTGTTGGAGTCCGCCAATCAGATTAATGACCTTTTGGTGATGCAGCGCCGTACCGAAGTCCGTATTTGTGAAACTGGTGTACTGCAGCCCA AATTGCCCCCTATTCACCCCCCGATAGTCCCGGGATCGATGTAAGGTTCTTCGGAACGCCCGGTCAGCGATAAACGCCCCCGACGTATCGACCAGGTGCA AACAATACAACCTATCGTCCCCTGCTCGCCTGAACAGCAGTTTGGTGCCTGACACCTCCAGAAGCTCTCCATGGGCAACCTTGGCCATTACTTCGGTCAT CAATGACCGCAGCGTCACCGGCCCCGGACGCGTGACGGCGTGATTGAAGTGTGGTTCAAAGCGATCCGAAGCAAAATCCACACGCCGCCAGGCTGCTGGC
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MEWLGQHFFTDLPDSGHLLLNCSHNPFLVLLAYLVACAAGFGTLDMAERVGHVENPTARRHWRWLGAGCLAGGIWSTHFISMLAFQAPIAIHYELILTFA SLLIALIASLLAMQTLSHTHLRFHQYLVASVWMGLGIALMHYVGMSAMRSQAQVYFETRLFLASVAIAMGASLAALLLSSYLRNGAGVFHQLLKYAASLV LGAGILSMHFTGMAAMQMLVPSGTDLSLRADDNPIQLGLSVAMITLLVIGSSVSAALADKKLQHKERDLRRVNALLSELDQARASLQQVAHFDALTSLLN RRGFNQIFAEKVAEKTRTQGMMAVIFLDIDHFKRINDSLGHDAGDQLLTVLAGHIKGSIRSHEDVVARFGGDEFCILVNIHHRDEARNMAQRIMQKMKEP IELAGRRMVMTTSIGISLFPEDGHTCEELLKTADLALYQSKDAGRNCLNFFSSNLKTRAFLELQLEEELRAALRTRSQLVLFYQPIFDMKLGKVTRLEAL VRWQHPQHGLLAPDRFIGIAENNGLIAELDHWVLRQACHDLSLLSDRGYTELIMAVNCSALNLARDELADEIEDALRFAGIGTNRLELEVTENALMGNIS STLALLRQIRALGVSLAIDDFGTGYSSLAYLKRLPLNTLKIDRSFIQDIPKSTADSEIVQAIIGMAHTLHLQVVTEGVETQAQFELLLKHGCDYIQGYLL SPAVPFDAIIGVMQGIAMRNPLYPLSVETNSETPAPKDPATERVGSQSIVRPIR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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