Pseudomonas fluorescens PA4C2, P909_RS08470
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PA4C2 scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACATCGCTACCCCCATGAGTTTTCCGGTGGACAGCGCCAACGCATCGCCATTGCCCGCGCCCTGGTGCTCAAGCCAGCGCTGATGCTGCTCGACGAACC CACCTCGGCCCTGGACCGTACGGTGCAGAAACAAGTGGTGGCGCTGCTGCGCGAACTGCAGGACAAATACGGCCTGACCTACCTGTTTATCAGCCACGAC CTGGCGGTGGTGCGCGCCATGGCCCATGACATGATCGTGGTCAAGGATGGCAAGGTGGTGGAGCGTGGCGCCAGCCATGATGTGTTCGAATCGCCCCAAC ACCCGTACACCAAAGAACTGCTGGCTGCAGCGCACATCCCGTTATAAACGTGAGCACACATTTCCCTCTGTGGGAGCGGGCTTGCTCGCGAAAGCGGCGG GCCAGGTAGTCTATCCGGCACTGGCATATCGCATTCGCGAGCAAGCCCGCTCCCACAGGGTCTCGATTTCACCCCAATTTTTTGCGTTGACGGCTTAAAC
|
|
| DNA Sequence for Gene |
>P909_RS08470
ATGAACATCACCGACAGCCTCAAGGACTACCAACAGGTTCGCGGCCTGGCCATCCAGTCGCTGTTCGAGATCATCGAGCAGTCCAGCGAGGGCACGGTCA TCGTCGACCGCGATGCGAATATCGTGTGGATGAACGAGCGTTACGCCAAGCGTTTTGGCCTCAAGAGCGCCGACCACGCCATCGGCCAGCCGTGCGAGCA GGTGATTTCCAACAGCCTGCTGCGCCAGGTGGTGCGCAATGACCGGCCGATCCTGCTGGACATCCAGGACACCCCCAAGGGCCCGCTGGTGGTGATGCGC CTGCCGATCCACGACGAGGCCGGAGCGGTGATCGGCGCGATTGGGTTTGCGCTGTTCGATGAACTGCGCAACCTGTCGCCGCTGATCGAGCGCTACCTGA GCATGCAGCAGGAGCTGGCCTCCACGCGCTCACTGCTGCGCTCGCGGCAAAGCAAATACAACTTCGCGCACTTTATCGGCACCAGCGCCGCCAGCCTTGA GGTCAAGCGCCGGGCGCGGCGCAGTGCGAGCGCCGAGTCGCCGGTGTTGCTGCTCGGGGAAACCGGCACCGGCAAGGAGCTGCTGGCCCAGGCCATCCAC GGCGCATCGCCGCGGGCGCACAAAGCCTTTGTGAGCATCAACAGCGCGGCGATTCCCCATGACCTGCTTGAAGCCGAATTCTTCGGCACTGCACCCGGTG CGTTTACGGGTGCCGACCGCAAGGGTCGCCCCGGCAAGTTCCAGATCGCCCAGGGCGGCACGTTGTTTCTCGACGAAATCGGCGACATGCCGCTGCCACT GCAAAGCAAATTGCTGCGGGTGTTGCAGGAAAAGGAATTCGAACCGGTGGGCTCCAACGAGATGCTGCACAGCGATGTGCGGGTGATTGCCGCAACGTCC ATGGACCTGGAGGCGGCGATCAAGCGTGGCGAGTTTCGTGCGGATTTGTATTACCGACTGAACGTGCTGCCGATCCAGGTGCCGCCGTTGCGTGAACGCC TGGAGGATATTCCAGCATTGAGCGAGGCGATCCTTGAGGAGTTGCGCAGCCAGCACGAACTGGACCGCGATGCGCTGGCGCTGTTGGCCCAACATGCCTG GCCGGGCAATATCCGCGAGCTTCGCAATGTGCTGGAGCGGGCGGCGCTGTTGAGCGATGACCTGATGCTCAATGCCAGCGACCTTCGCGCAGCAATTGGC ACGTTCAGCCCGGTACAACGGGGCGCGGTGGCGGCGGTCGAGGGTGAAACCTTTGCAGCGGCGCGGGAGCGGTTTGATCGGCAGGTGATTGCGGGGGCGC TCAAGGCCTGTGAGGGGAATGTGATAGAGGCGGCCAAGCGGCTGGGGCTTGGGCGGTCGACGTTGTACAAGAAAATGCTGGCGCTTGGACTCACCCAGTC TCTGATTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GACACAATTCTACATACAAAGACATTCCCATGTGGGAGCGGGCTTGCTCGCGAATGCAGTGTGTCAGCAAGGATGATTTGACTGACACACTGCATTCGCG AGCAAGCCCGCTCCCACATTTGCCGTTCATTGATCTCAAAAATGAGACAAATTTCGTAATCGCCCATGAAATAAAATATTTTATCTTTATTTATCAACAG GTTAATAAGATGGCACACATCTCGCTATAGCTCCCATCCAACGCCTCACCCACAACAATAACAATCCGATGGAGACACACCATGAGTGTGATCATTGCCC TGGCTGCGCTCGCGCTGCTGATGCTGGCCGCCTACCGTGGCTATAGCGTTATCCTGTTTGCCCCCATCGCCGCCCTTGGCGCGGTGCTGCTCACCGACCC GTCCGCCGTCGCCCCTGCCTTTACCGGGGTGTTCATGGAAAAGATGGTCGGTTTTATCAAGCTGTATTTCCCGGTATTTCTGCTCGGTGCGGTGTTCGGC
|
|
| Amino Acid Sequence |
>Fis family transcriptional regulator
MNITDSLKDYQQVRGLAIQSLFEIIEQSSEGTVIVDRDANIVWMNERYAKRFGLKSADHAIGQPCEQVISNSLLRQVVRNDRPILLDIQDTPKGPLVVMR LPIHDEAGAVIGAIGFALFDELRNLSPLIERYLSMQQELASTRSLLRSRQSKYNFAHFIGTSAASLEVKRRARRSASAESPVLLLGETGTGKELLAQAIH GASPRAHKAFVSINSAAIPHDLLEAEFFGTAPGAFTGADRKGRPGKFQIAQGGTLFLDEIGDMPLPLQSKLLRVLQEKEFEPVGSNEMLHSDVRVIAATS MDLEAAIKRGEFRADLYYRLNVLPIQVPPLRERLEDIPALSEAILEELRSQHELDRDALALLAQHAWPGNIRELRNVLERAALLSDDLMLNASDLRAAIG TFSPVQRGAVAAVEGETFAAARERFDRQVIAGALKACEGNVIEAAKRLGLGRSTLYKKMLALGLTQSLI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|