Pseudomonas fluorescens PA4C2, P909_RS08425
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PA4C2 scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCTTTGCTGACCCCGCGACAGGTGAGTGGATCGCGCTTCACGTGATGCGTCACGTACACAAGCCCGAGCCCTCCAGTGTGGTCGTCGACAGCGTCGCA CAGCCTTGGGACGCGGCGTTGCAAGCCGTGATGCCTTGCCTGCGCAAGGACGGCCTCAAGGCTGCGGTGGGGGGGCTCAAGCAAGGGCTGCGGGCGGCGT GCGGTGATCGAGCGCGCTTTCATTGGCACCTGGCGCTGGCCAGGTTGTGTGTGGCGGCCGGCAAGCATGACCTGGCCAGGATCCAGCTGGAACAACTCGA CCTGCAGTTACAGCGCACGGGCCTGGAAAATTGGGAGCCGCAGCTGGCCGTGCAAGTCGGCCAGCTGCTGTATCGCTGCTACGACCTGTTGCCACAAAAC CAATCCGTACAAGACGCAAAAGACACCCTGCATCGCCGGTTGTGCCATTTCGACCTGGAAGCAGTACTTGAATAGTGCCTCATCAAAAAGGAAAAGCACC
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| DNA Sequence for Gene |
>P909_RS08425
ATGGCCAAAGACGGTTCGGTAGCCCCAAAGGAACGCATCAACATTACCTTCAAACCCGCCGTCGGTGGCGCTCAGGAAGACGTCGAGCTGCCGTTGAAGC TGCTGGTGCTGGGGGATTTTTCCCTGCGCGCGGACCCGCGCAAACTTGAAGATCGCAAGCCCATCGGCATCGACAAGCACACCTTTGACGAGGTGTTGGC CAAGCAAGCATTGAGCTTGACGCTGAGCGTGCCCAACCGCCTCCAGGAGGCAACCGACATGGAAGAGTTGCCGGTCCAGGTGCGGATCAGCGCGATGAAG GACTTCAACCCCGCGAACCTGGTGGAACAGATTCCGCAATTGCAAAAGCTGATGGCTTTGCGTGAGGCGTTGGTGGCGCTCAAGGGCCCGCTGGGTAATA CGCCCAGCTTTCGCAACGCTATCGAGCGGACGCTGGCCAATGGCGACTCGCGCGCACGAGTGCTCGCCGAGTTGGGGCTGGATAGGCCCCAAGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATTTTCAGTAAAAGGACACTGACACCATGACCACGATTCAACACGGCCCGCAACCCGTACAGGTTATCGAAGGCGGTAGCATCCTCGATAACATCATTT CCCAGACATTGCTCAGCGCCGACGACGAGGCTTATGGCATCGCCAAGCGCGGGGTCTCGGCGTTTATCGCAGAGCTGGTCAAGCCACATAATTGTGACGA GCCGGTAAAAAAACGCCTGGTCGACCGGATGATCGCCGAGATCGATACCAAGCTCAGCGAGCAAATGGATGAGATTCTTCACCACCCGGAGTTCCAGGCT CTGGAGGCTTCGTGGCGAGGCTTGCAGTTGCTGGTTGAGCGCACCGATTTTCGCGAGAACATCAAGATCGAGCTGTTGAATGTCTCGCGCCAGGACCTGC TGGATGATTTTGAAGACTCCTCGGAAATTACCCAGTCCGGGTTGTACAAACACGTCTATAGCGCCGAATACGGCCAGTTTGGCGGCCAGCCGGTGGGCGC
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| Amino Acid Sequence |
>type VI secretion protein
MAKDGSVAPKERINITFKPAVGGAQEDVELPLKLLVLGDFSLRADPRKLEDRKPIGIDKHTFDEVLAKQALSLTLSVPNRLQEATDMEELPVQVRISAMK DFNPANLVEQIPQLQKLMALREALVALKGPLGNTPSFRNAIERTLANGDSRARVLAELGLDRPQV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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