Pseudomonas fluorescens PA4C2, P909_RS08390
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PA4C2 scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCAACTGTCCAGCCACGGTTTTCCCGGCAACGTGCGCGAGCTCAAATGCCTGGTGGAGCGCGCCGTGTTGTTGTGTGACGACCGCGTGATTCGGCCCGAG CACCTGGCGCTGCCCCTGGCATTTAAGCCGGCCACTCCCGATGACGTGACGCTGCGCCAACGTATGGAGCGAGTGGAGCGCACGTTCCTACTCGACTGCC TGCACAAGAACCACGGCAATCGTACCCGTACCGCGCGGGAGCTTGGGGTCGCCCGGCGTACCCTGCTTTACCGTCTGGCCCGTTTGAATATTCCCTTTGG TGATGCCCGGGAGGAACGCTGAATGACGCACTCGATTTTTACTGGGGGAGAAGCCTGATGCCTGATCGTGCGTGGCACGTCGTCGTGCTGGTGATGTGTT TGTTGGGAGGCTGTAACGCCAACTATGTGTTCGATGATGCCGAGTACCACCCCTTGGGTGATCCGCAGGCGATCATTCGTGGCCGCTGAAAGGAGAGGGC
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| DNA Sequence for Gene |
>P909_RS08390
ATGAAGCTGCAGCTTGTGTTTGAGGTCTGCGCCTGCGAGAGCGACAAGAGCCTACTTTTGGCCCGCAAAGTATTTGACGGTGCAGGCGGCGTGATCGGGC GCGGCCCTGGATGTGACTGGGTGATCCCTGACGCCAGTCGCGTACTCTCCAGCCATCATGGGTTGATCGGTTACCGTGAAGGCCGTTATTTCCTCACGGA TATCAGCCGCAACGGTATAGGACTGGCCAGCAGTCCTGAGCGCCTGCGCAAGGGGCAGGCGCGATTGATCAGTGACGGTGACGTCTTCGAGCTGGGGGTA TTGACGATACGTGCGCGCCTGCTGGAATCGACGCGACCTTCCGACGAGTTGCTGACGCCCGCGGCAGTACCGATCCCCGATGACGCTTTCCTGTCGCTGG ACCCGCTGCACGGCTTGGAGCTTGATCGCCAGATGCAGGCCACCTCCGATGATCTGGAGGCCTTGAACAAGAGCGCCGATGAGCAAGCGATATGGGCAGA TCACTTTGGGGCCGATAGCGAGCACGTGGCCTTGCCGCGTCGGCAAGCCCCTTCGATAGAGGTTGCCGCCGTACCCGCTGTTGCGATGACCCCATCGACC GACGAGGTGTTCTGGTCACAATTTGCAGCGGTCCTGGGCGTTGACCTTACGGCCCTCGACACGCTGGCCCGGGAGGCACTGGCGATCAAGGTGGCACGCT TGTTTCGGGTGACGATCGAAGGGCTGCAACAGGGTTTGCGCACTCGGGAAGAACTGAATAACGAATTGGGTACGGCGGCGTTCGCCAGTCAGGGCATGGG CCAGAACCCCTTGAAAGTGTATCGCGACACCGATGCTGCGTTGGCCGCGATGCTCGATACCCGGGAGTTGGGGCAACTGCCTGCCGTGCGCGCCATTGCC CAGGTGCACCGAGAACTGCAGGTGCATCAGATTGCGCTGCTGGCCGCTTGTCGAAGCGCCATACGTAACGCCCGCGCGGCCTTTGAGCCCAGCCACCTGT TGGGGTGCTTTGAGTCCCAGGGCAAATCGGCCGGGTTTTTCTCCGATGGCGGGCATTGGCGGGCCTACCAGCGTCACTACCAGCGTGTGGTGGTGCAAGA CCAGTTGAATGATCGCCCGTTGGGCGGCGACTTCGCCAAAGCCTATGAGGAGCAGTTGCGCCTGCTCTCCAGCCTGCACATGGATTTTCCAGGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGTCATGTATCGAGCCACCCTTGTTTCGCTGTTGATCTTGTGCGGGCTGTTGGCGGGCTGCAGTGCCGTCTCACCATTTTCCAGGCTGACCAAGCTGGA TGTGGTGCTGACCGCCAGCGAGCACGTCAACCCGGACCTGCACGGTCGTCCTTCTCCCGTGGTGGTGCAGTTGATCGAACTGCGCCATGGCGTCGCCTTT GAACATGCCGACTTCTTCAGCCTGTATGGCAATGCGCAGCAGGCGCTGCCCAAGGACTGGGTCGGCAGCGAGGAGGTTGAACTGCGTCCGGGTGACGGGC TGGCGCTCAAACTGCGCATCGCTCCTGAGAGCCGTTTTGTGGGAGTGCTGGCCGCTTATCGAGACTTGCCCCATGTGCAATGGCGGCTGCTGGTGCCCTT GACGGTGCAGCAACGCAACCGTGCCGAGTTGGTGCTGGACGAGGGCGGTATACGTGTTGCCGAGCCGCTCGCTGCTGTGGAGACACAATAACATGCAGGT
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| Amino Acid Sequence |
>type VI secretion protein
MKLQLVFEVCACESDKSLLLARKVFDGAGGVIGRGPGCDWVIPDASRVLSSHHGLIGYREGRYFLTDISRNGIGLASSPERLRKGQARLISDGDVFELGV LTIRARLLESTRPSDELLTPAAVPIPDDAFLSLDPLHGLELDRQMQATSDDLEALNKSADEQAIWADHFGADSEHVALPRRQAPSIEVAAVPAVAMTPST DEVFWSQFAAVLGVDLTALDTLAREALAIKVARLFRVTIEGLQQGLRTREELNNELGTAAFASQGMGQNPLKVYRDTDAALAAMLDTRELGQLPAVRAIA QVHRELQVHQIALLAACRSAIRNARAAFEPSHLLGCFESQGKSAGFFSDGGHWRAYQRHYQRVVVQDQLNDRPLGGDFAKAYEEQLRLLSSLHMDFPG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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