Pseudomonas fluorescens PA4C2, P909_RS07880
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens PA4C2 scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCACGATGCCGTTGGCCGCGCGAGTGCCAAGGCGTGCAGCCTGGTGGGTGCGCAGTTGTATGAACTGCCGGTCTGGGCCTGGCACTGGCCAGCACGGGAA AGCGCGGTAATGCCCTGGCAACGTGCACGCAAGGTCCGCCTGGACACCTGGACCGTCGCACGCAAGCTGCACGCCGCCCACGCCTACGCCAGCCAGTTGG TGGGCGACCCGCAGATCGGCTTACCGCCGATGCTCGCGCAAATATTGCTGGAACGCATGCGCGAGCCCTACGAAATCCTGTTCACCTGAACACCCCCTGT AGGAGCGAGCTTGCTCGCGAAAAACCTCAACGATAATGCGTGCTTGCTGAATAAACGCGGCGCCAGTGAGTCTTTCGCGAGCAAGCTCGCTCCTACAGCG TTCGGGCTTTTCCCTACAGACTCAATCTGCCAAACTGATGCGAATAATTATCAACAGATTTATTATTCGCCACGGACGGCGCTTGGGGAGCCCTACTTTC
|
|
| DNA Sequence for Gene |
>P909_RS07880
ATGTCTGTGCAACAACGCGGCGGCAACGTTTTTACACCCAGTCTGATGGCAATCACTATCGCTCTAGCAACCTCCAATGCGGCCATGGCCGCCGACGCCG AAGCACCGGCCACCATTGAGCTGGGCGCCACCCAGGTCTCCGGCCAACAGCTTGGCGCAACCACCGAAGGCAGCGAGTCGTACACCACCGGCTCGATGAA GACCGCAACCAAACTGCCGCTGACCCTGCGCGAAACCCCGCAGGCCGTCACCGTGATCACGCGCCAGCGCATGGATGACCAGGCCATGACCAGCATCAAC GACGTGGTCAACGCCACGCCGGGGCTGTTCCTCAATTACTCCAACGGCCCTGGGCGACAAGGCTTTACCGCACGCGGTTTCGACATCGACAACCTCATGT ATGACGGTATACCCAGCGGCTACAACGGTGCATCGGTAGGCGCGCAGCCGAACCTGGCAATGTTCGACCGCGTCGAAGTGGTGCGCGGCGCTACCGGCCT GGTGACCGGCGCGGGCAACCCTTCGGCCGCGATCAACCTGATCCGCAAGCGGCCACTGGACGAGCAGAAAGTCACTCTCACCGGCGCCGTCGGTAGCTGG GACGACTACCGTGGCGAACTCGACGCCTCCAGCCCACTCAATGACAGCGGCACCTGGCGCGGGCGCGTCGTCACCTCTTATCGCGATGCCAACAGCTTTA TCGACAAGGCCGAGCAGGATCATGGCCTGTTCTATGCCGTCACCGAAGCCGACCTGAGCGAAGACACCACCCTGACCCTCGGTTACTCGAACCAGAAGGA CAAGACCAACTACTTCTGGGGCGCTTCGATGGTCGGCCTGGATGGCCGCCACCTGGACCTGTCGCGCTCCTATAACCCAGGCACCGATTGGGAGAACAAG GACCAGGAAATCAACACCCTGTTCGCTGAGCTGCGCCAGCGCCTGGCCAACGACTGGAGCCTGCAGGTCAACGCCAACTATGCCGAACAGAACGCCTTGT TCTCCGGTTCCTACCAATCGCGCTGGACCAAAAGCACCCTGGCCCGCACGGTGTACCAGGCCAGCTACGATGAAAACCAGGCCGGGCTCGACGCCTTTGC CAGCGGCCCGTTCGAGGCGTTCGGCCGTACCCATGAACTGGTGGTGGGCGCCAGCAAGCGCATCTACGACATGACCACCCACAACTACAGCCCGTACGAC CTCAACTGGCCGATCAATGCCGGCAAACCGAACTTCACCCGCACCAACAACGTTCGCGAAGTCACCACCCAGGACGGTTTCTACCTGACCAGCCGCCTGA GCCTGGCTGACCCGCTGAAGCTGATCCTCGGCGCTCGCCTGGACTGGTACGACTACGACAACCGTGATGCCGCCGGCGACTACAAGGTCACCCGCAACCT CACCCGCTACGCCGGCCTGATCTACGACCTGGACGACCAGCATTCGGTCTACGTGAGCTACAGCGACATCTTCACGCCGCAAAAGGAAAAGAGCACAGCC GGCACCCCACTCAAGCCCATCGTCGGTAAAAATTATGAAGTTGGCGTCAAAGGCGAATACTTCGGTGGCACGCTCAATGCCAGCGTGGCGTTGTTCCGCG TCGACCAGGAAAACCGCGCCGTGCCGGTGGTGGTGCCCAACTGCCCGCAGGCGTCCTGTGCCGACGCCTCGGGTGAAATCCGCAGCCAGGGTATCGACTT CGAACTGCAAGGCGCCTTGACCGAAAACTGGCAGGTCGGCGGCGGCTATACCTATGCGCGCACCCACACCATCAAGGACGACGCCAACCCGCAGAAGGTC AACAAGCAGTTCGATACCGACATCCCGGAACATCTGTTCAAAGTGACCACCCGCTACAACTTCCAGGGCCCGCTGGAAAAACTCCGGGTCGGCGGCAATA TCTCCTGGCAGAGCCGCATGTACAACGACATCAAGCTAGCGGATGGCAGCAACTACCGGCTCCAGCAAGGCGGCTACGCCGTCACTGACTTGATGGCGGG CTACCGGGTCAATCAGCACCTGGATCTGCAGCTCAATGCCAACAACATCTTTGATCGCCACTACTACCAGTCCATCTCCAACTCAGTGACTTATGGCGGC GACTCCTATGGCAGCCCCCGCAACATGATGCTGACTGCCAAGTACAGCTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCTCACGGCAACCTCGGCTGCTCGCTCGGGCAGCCGTTCTTAAAGTCCCACGCCCGCGTGCCGATAACGCGTGGGTAACCGGCGACAATCCTGAACATC TGCTTGACTCCACAGCGGCGCGCCTGTGTGGCACACCGCGTGCTTGCTTGACCTCGACGCCCCCTCTCATGGAGTAAGAGTGAATGCCTGTCCGTTTTCT AGAGCACTATCGCAAGGCCGACCGCATCATGCTGGCATTGATCTGGCTGATGTTGCTGTTCTCCCTCGGCCTGGCGTTCTGGCACGACACCCTCATGCAG GCCGTGATCGTCGGTGGCGGCACCGGCGTGGTGCTCACGGCGCTGTACCGCGTCATCGGCGGCACCCGCGTGATGCGCTGTGCACTGGGTGCCGGCTTGA TGGTGATGGCGGCGTTGCACATCAACCAGGCGCACGGGGTGATCGAATCCCACTTCGGCATTTTCGCGCTGTTGGCGGTGCTGACCTTCTACCGTGACTG
|
|
| Amino Acid Sequence |
>TonB-dependent receptor
MSVQQRGGNVFTPSLMAITIALATSNAAMAADAEAPATIELGATQVSGQQLGATTEGSESYTTGSMKTATKLPLTLRETPQAVTVITRQRMDDQAMTSIN DVVNATPGLFLNYSNGPGRQGFTARGFDIDNLMYDGIPSGYNGASVGAQPNLAMFDRVEVVRGATGLVTGAGNPSAAINLIRKRPLDEQKVTLTGAVGSW DDYRGELDASSPLNDSGTWRGRVVTSYRDANSFIDKAEQDHGLFYAVTEADLSEDTTLTLGYSNQKDKTNYFWGASMVGLDGRHLDLSRSYNPGTDWENK DQEINTLFAELRQRLANDWSLQVNANYAEQNALFSGSYQSRWTKSTLARTVYQASYDENQAGLDAFASGPFEAFGRTHELVVGASKRIYDMTTHNYSPYD LNWPINAGKPNFTRTNNVREVTTQDGFYLTSRLSLADPLKLILGARLDWYDYDNRDAAGDYKVTRNLTRYAGLIYDLDDQHSVYVSYSDIFTPQKEKSTA GTPLKPIVGKNYEVGVKGEYFGGTLNASVALFRVDQENRAVPVVVPNCPQASCADASGEIRSQGIDFELQGALTENWQVGGGYTYARTHTIKDDANPQKV NKQFDTDIPEHLFKVTTRYNFQGPLEKLRVGGNISWQSRMYNDIKLADGSNYRLQQGGYAVTDLMAGYRVNQHLDLQLNANNIFDRHYYQSISNSVTYGG DSYGSPRNMMLTAKYSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|