Strain | Pseudomonas fluorescens PA4C2 scaffold1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CGGCGATTTTATTCCGGAGCAACATCGATGACACAGCAACCCCATGTCCATGGTCCTGACTGCAACCACGATCATGACCACCATGATCACGACCACGGCC ATGTCCACGGCCCGAACTGCGGCCACGCTCACCAAGAGCCGGTGCGCAATGCGTTGAAGGACGTCGGTCGCAACGACCCCTGCCCGTGCGGCAGCGAGAA GAAATTCAAGAAGTGCCACGGTGCTTAAGTACTGAAGATCAAAATGCCGGCGGCCCCCCGCCCCAGCCTTGATCCAAGGTTACATGCGATCAAATGTGGG AGCGGGCTTGCTCGCGAATGCGTTCCGTCAGTTGATACAGACACTGACTGATACACTGCTTTCGCGAGCAAGCCCGCTCCCACACAGGTCTGCGCCTGAC TCAAGTTCTAATGTTTAACCCAAAACTCCCGCTTGCGTCGTTTCGCCGCGCTCACTAACGTAGCGCCTTTACTGACGCTACCCCCCGCAGGAGCTTTGCC
|
|
DNA Sequence for Gene |
>P909_RS00630
ATGGCCTCGCCAGCCCTCTTACATTTTCTTCCCCGGTTCGGCGTTGCCGCGGCAGTGGTCAGTGCCTTGGGCCTGGCCGGTTGCCAGCTCCAGAACACCC AGGGCACCCTACCGCCCGTTGCTGGCGTGCAGCCGATCAAGGGCCTGGCACAGAATGTGTCGGTGCGCCGCAATGCCCAAGGCATGCCGCTGATCGAAAG CAACACCTTCCACGACGCACTGTTCAGCCTCGGTTACGTGCACGCCAGCGACCGCATCACCCAGATGGTCACCCTGCGCCTGCTGGCTCAGGGCCGTCTG GCGGAAATGTCGGGGCCGCAAGTGCTGGACGTCGACCGCTTCATGCGGGCGGTCAACCTCAAGAAAAGCGCTGGCGAGTTGTACAACGCCTCATCGCCAC GCCTCAAACGCTTCTTTGAAGTGTATGCCCGAGGCGTCAACGCCTACCTGTTCCGCTACCGCGACAAGCTGCCGGCGGACCTGGCCCAGAGCGGCTACAA GCCCGAGTACTGGAAGCCGGAAGATTCGGCGCTGCTGTTCTGCCTGCTCAATTTCAGCCAGTCGAGCAACCTGCAGGGGGAGCTCTCGTCCCTGGTGCTG GCGCAAAAGGTCGGCGTCGACAAACTCGCCTGGCTCACCCCAAGCGCACCGGACGAACCCGTCCCGTTGGCAGAAGCCGACAAGCTCAAAGGCGTCAACC TGAGCCAGATCACCGGCCTCGCCGGGCTGGAAACGGTAGGCCAGCAATTGCGCAGCCTCAACGCCCTGGGCGTCACCACCTCAAGCAACTGGGCCATTGG CCCGCAACGCAGCCGCAGCGCCAAGAGCCTGTTGGCCAACGACATCGCCGCGCAGCCACAAGCACCGTCGCCGTGGAACTACGTGCAGATTCGTGCGCCC AAATACCAGGCCGCCGGTGCTTCGATTGCCGGCCTGCCGACCCTGCTCTCCGGTTTCAACGGCAAAGTGGCGTGGAGCATGAGCGCGGTCAAGGGCGACA CCCAGGACCTGTTCCTGGAGAAGGTCAAACGCCAGGGCAACGCGCTGTACTACGAGAACAACGGCAAATGGCTGCCGGCCGGCGTGCGCAACGAAACCTT CTTCATCAAGGGCCAGCGCTCGATTCGCGAAGTGGTGTACGAAACCCGCCACGGCGCCCTGCTCAACAGCAGCCAGGCGCTCACCAGCGGCCTTGGCCTG GCCTTGCAAACCGCCGACTTCAAGGACGACAAGAGCCTGGATGCATTCTTCGACCTGTCCCGTGCCCAAAACGCTGGCAAAGCCTCGGATGCCACCCGCG AGATTCGCGCCATCGCCTTGAACATGATCTTCGCCGACGCCAGCAACATCGGCTGGCAAGTCACTGGCCGCTTCCCCAACCGCCGCGAAGGCGAAGGCCT GTTGCCATCGCCGGGCTGGGACACGCGCTTTGACTGGGACGGCTACGCCGACGCAATGTTGCACCCGTACGACCAAGACCCGGCCCAGGGCTGGATCGGC ACCGCCAACCAGCGCACCGCACCGCGTGGCTACGGCATGCAACTGTCCAACGCCTGGGATGCACCGGAACGCAGCGAACGCCTGGCGCAACTGGCTAACG CCGGCAAGCATGACAGCCGCAGCCTGATTGCCATGCAATACGACCAGACCACCCTCTTCGCCGCCAAGCTCAAGAATATGTTCCAGGCGCCGGGCATGGC CCAGCCCCTCAAGCAGGCCATCGATGCATTGCCGGCAGCGGAACGCGCCAAGGCCCGCGAAGCACTCGAGCGCCTGATGGCCTTCGATGGTCGACTGGCG ACCACCTCGGCTGACGCGGCGATCTATGAACTGTTCCTGCAAGAAAGCGCCCGGCAAATCTTCCTCGACAAACTAGGCCCGGAAAACAGCGCCAGCTGGA AAGCCTTCGTCAGCAACGCCAGCCTGTCCTACTCGGCCATCGCCGACCACCTGCTGGGCCGTGAAGACAGCCCGTTCTGGGATGACACGCGTACCGCGCA AAAAGAAGACAAACCTGCGATCCTGGCCCGCACCCTGGCCGCCGCCATCACTACTGGCGACAGCCAATTGGGCGCCGATCACAAGGCCTGGCAGTGGGGC AAGCTGCACAGCACCACATGGAAAAATACCAGCGGCCAGGTCATCCGCGGCCCCTTCGCCAGCGGTGGCGATCACAACACCCTGAACCCGGCACCGTACA CCTGGGGCCAGGATTTCAACGCGACCCAAGTATCGGCGCTGCGCATGATCATCGACTTCGGCCAGACGGAGCCAATGATGGGCCAGGGCGGCATCGGCCA ATCCGGCAACCCGGCCAGCCCGAACTATGCCAGCGGCATCGACCCGTCGCTGAAGGCGCAATACCTGAGCTTTCCGATGCAGCCGCAGAATTTTGAGAAG GTGTACGGCAAGACAAGGTTGACCCTGACGCCTGGTAAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
CCGGGCTTCCTTGACGAAACCGGATAACGCTGTGTGGCTTGCTGCGATAGCAGCCGACGGTAACCACGATGCGAAGCGAGCCGCTCTTGATCTGCTTTTG ATCTGCTTTTGATCTTAGGCGCCCCGTTAAACCACGCTGGCCGAACGCAGGCTTGAATTCGTGGGTAACCCGGCAGGACGCCGGGTTAGCCGCCCCGCGC CATGGATGGCGCGTGGCGGCGGCCCACGGATTCAAGCCTGCGTTCGGGCACACCGAGCCCAAGCGAGGTGCCGAGTGGTGGGGCAAGAGCGTTTTGCTTA CTTTTGCGCTGTTCAAAAGTGAGCCGCCGTCAGGGCGGAACCCGAAGCGGCCGTTACCGCAGCAATGGATATGTACACAATCCAACTGTGTTGACTGCCA GGCCGCCTTCGCGAGCAAGCCCGCTTCCACAGTTGGATTGTGGGGTATCAGGTAGATAGGTGTCGGCTGGGAGGCCGTCATCGCAGGCACCCCCCCCAGT
|
|
Amino Acid Sequence |
>acyl-homoserine lactone acylase subunit beta
MASPALLHFLPRFGVAAAVVSALGLAGCQLQNTQGTLPPVAGVQPIKGLAQNVSVRRNAQGMPLIESNTFHDALFSLGYVHASDRITQMVTLRLLAQGRL AEMSGPQVLDVDRFMRAVNLKKSAGELYNASSPRLKRFFEVYARGVNAYLFRYRDKLPADLAQSGYKPEYWKPEDSALLFCLLNFSQSSNLQGELSSLVL AQKVGVDKLAWLTPSAPDEPVPLAEADKLKGVNLSQITGLAGLETVGQQLRSLNALGVTTSSNWAIGPQRSRSAKSLLANDIAAQPQAPSPWNYVQIRAP KYQAAGASIAGLPTLLSGFNGKVAWSMSAVKGDTQDLFLEKVKRQGNALYYENNGKWLPAGVRNETFFIKGQRSIREVVYETRHGALLNSSQALTSGLGL ALQTADFKDDKSLDAFFDLSRAQNAGKASDATREIRAIALNMIFADASNIGWQVTGRFPNRREGEGLLPSPGWDTRFDWDGYADAMLHPYDQDPAQGWIG TANQRTAPRGYGMQLSNAWDAPERSERLAQLANAGKHDSRSLIAMQYDQTTLFAAKLKNMFQAPGMAQPLKQAIDALPAAERAKAREALERLMAFDGRLA TTSADAAIYELFLQESARQIFLDKLGPENSASWKAFVSNASLSYSAIADHLLGREDSPFWDDTRTAQKEDKPAILARTLAAAITTGDSQLGADHKAWQWG KLHSTTWKNTSGQVIRGPFASGGDHNTLNPAPYTWGQDFNATQVSALRMIIDFGQTEPMMGQGGIGQSGNPASPNYASGIDPSLKAQYLSFPMQPQNFEK VYGKTRLTLTPGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|