Pseudomonas fluorescens UK4, HZ99_RS18060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain UK4, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GAGCTGGAGCAGCTCAAGGTGGTCAACCTGTTCTTCAACAAGCGTGTGCGCTATGTCGAAGATATCGACTTGTGGAATCAGGTCGATTATTGGGAGACGC CCATCGAAGCCCTGTGGAAAGGCGCCGGCGATTGTGAAGACTACGCCATCGCCAAATATTTCAGCCTGCGGCACCTGGGTGTTTCCAGCGACAAATTGCG CATTACCTACGTCAAGGCATTGCGGCAGAATCGCGCCCATATGGTCTTGACCTATTATTCGACCCCAGAGGCCATGCCGCTGGTACTCGACAGCCTGATC GACGAAATCCAGCCTGCCAGCCAACGGACCGACTTGCTGCCGGTCTATTCCTTCAACGCCGAAGGCTTGTACCTGCCCGGCGCCAAGGGCAACAAGAAGG TCGGCGACACCAAACGCCTGTCACGTTGGCAGGATGTGCTGAAGAAAATGCGTGCGGAAGGCTTCCCTGCCGAGCCGGCCAACTAGGAGTAACTGTTCAG
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| DNA Sequence for Gene |
>HZ99_RS18060
ATGTCACTGTTCAAACAGCTGTTGATCGCTATCTGTCTGTTCCTGGTGGTCGCCTTCAGTGGCAGCTTCATGGTCAGCCTGGAAAGCTCGCGTACCCAGT ACGTGAACCAACTGCGCTCCCACGCGCAGGACGCGGCGACAGCCCTGGCATTGTCCCTGACGCCAAACATCGACGACCCGGCGATGGTCGAGCTGCTGGT CAGCTCGATCTTCGACAGCGGTTATTACGCGAGCATCCGTGTGGTTGACGTGACTAATGGCCAGCCCATCGTCGAGCGCAGCGGCATCCCAGACAACAAC GGCGTGCCCAACTGGTTCGTCAAGCTGATCGGCCTGGAGCCGGCCGGTGGCGATGCCTTGGTCAGCCGTGGCTGGGAGCAGGCGGCACGGGTCGAGGTGG TCAGCCATCCGATGTTCGCCCTGGCCAAGCTGTGGCAGAGCGCCCTGGGCAGCCTGGGGTGGCTGCTGCTGTGCGGTGCGGTGAGTGCGGTGCTGGGCGC GTTGCTGCTGCGCCGGCAACTCAAGCCTTTGGACTATATGGTCAAGCAGTCCCATGCCATTGCCCGCCGCGAGTTCCTGAGCCTGCCGGATCTGCCGCGC ACCCCGGAACTGCGTCGCGTGGTGCAGGCGATGAACCAGATGGTCGAAAAACTCAAGGCCCTGTTCCAGGAGCAGGCCGAGCGCAGCGAAAAGCTGCGGG TGGAGTCTTACCAGGACAACCTCACGGGCCTGGCCAACCGTCGCTATTTCGAGATGCAGCTCAACGCCCGGGTCAGCAACCCCGAGGAAACCAGCTCAGG CTACCTGCTGGTGCTGCGGGTCAAGGACTTGGCCGGCCTCAACCAGCGCCTCGGTGGCCAGCGTACCGATCAGCTGTTACAGGCAGTTGGCGAACAACTG CTGCGCCAGTGCGAGCCCTATCCGGAAACCCACAATTTGGTGACGCGCATCCGCGGTGGCGAATTTGCCGTGCTGGCGCCAGGGCTGATGCGTGAAGAGG CATTGCAGCTGGCGCAGAACCTGGAAAGCACCCTGCAAAGCCTGCAAGCCACCGGTGCCAGCGATGTTTCGCCGGTCGCCTGTATTGGCCTGGCGCCGTT CAATCACGGTGATTCGCCCCAAGCCCTGTTGACCCTGGCCGACCAGGCACTGGCCCAGGCCGAAACCCTGGGGGATGTCAGTTGGGTGTGCCTGGACCAC AGTGCCGCCGCCAGTGTTGGCGACGATCATCACGCCTGGCACTCCCTGCTCGACCAGGCGTTGATCCAGCAGCGCTTCGAGCTGTACTTCCAACCGGTGG TGGCCAGCCAGGATCCGCAACGGGTCCTGCATTACAAAGTCCTTTCACGCCTGGTCGACGGCCAGGGCCACACCATCCCGGCCGGGCGCTTCCTGCCTTG GCTGGAGCGGTTTGGCTGGTCGGCGCGCCTGGACCGGTTGATGTTGGAACTGGTGCTCAAGCAGATGGCCAGCCACAAACATGCGTTGGCTCTGAACCTG TCTGCGGCCACACTGGCCGACCCGCAGGCCCTGAGCCGTGTGTTCGACCTGCTGCGCCAGCACGCCAGCCTGGGCCCGCGCCTGACCCTGGAAATCGGTG AAGAGCAAGTGCCTGAACAAGCGGTGCTGGAGCAGTTAACCCAGCGCCTGCGGGAGCTGAATTTTTCCCTCAGCCTGCAACGCTTTGGCGGGCGTTTCAG CATGATCGGCAACCTGGCGCGCCTGGGCCTGGCCTACCTGAAGATCGATGGCAGCTACATCCGCGACATCGACCAGGAAAGCGACAAGCGTCTGTTTATC GAAGCCATCCAGCGCGCAGCCCACAGCATCGACTTGCCGCTGATTGCCGAGCGGGTCGAAACCGAAGGTGAATTGAAGGTGATTCGCGAGATGGGGATTT TCGGCGTACAGGGTCAGCTGTTTGGTGAGCCGGCACCCTGGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GACCGTGGCCGGCCTCAGATCAGGCCGGTCTCATCATCATTGATCAGGTGGCTCAGGCCACCCAGTGATTCCCGGGCGTTGCTGCGATCTTTCAATTTGG CTTGCGCGGCGACCGGCAGGTCCGTCAGGTTGATTACGCCTTTTTGGATCAGCACCTGAATCAAGTCTTCCAGCACCCGGATCATCTCCGAGTCACTGTG CTTGAGCTGCTGGAGGCTCAGCTCCGCTTCTTCATTGGCAAACCAGGCCTGGATCTCATGATGATCCGCTGGCAGGGTGCCCGTCGATTCGGCGAAGGCA ACCGCTTCGGCGCGAATCAGCTCACCCTGTGCATCACGTTGCACGTAGAACATTGAACATCCCTCATGAGGAGAACTGACGACAGCCTGTCAGCAGCATA GGCCAACGGAGCGCGATTGGGCGTGAGTATGCCGTGCAATCGTTGCCCCAGGCCAGCGAACGGTCGCCGCAAATGACCCCGCCGCCTCAGGAGGCGGCCG
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| Amino Acid Sequence |
>DeoR family transcriptional regulator
MSLFKQLLIAICLFLVVAFSGSFMVSLESSRTQYVNQLRSHAQDAATALALSLTPNIDDPAMVELLVSSIFDSGYYASIRVVDVTNGQPIVERSGIPDNN GVPNWFVKLIGLEPAGGDALVSRGWEQAARVEVVSHPMFALAKLWQSALGSLGWLLLCGAVSAVLGALLLRRQLKPLDYMVKQSHAIARREFLSLPDLPR TPELRRVVQAMNQMVEKLKALFQEQAERSEKLRVESYQDNLTGLANRRYFEMQLNARVSNPEETSSGYLLVLRVKDLAGLNQRLGGQRTDQLLQAVGEQL LRQCEPYPETHNLVTRIRGGEFAVLAPGLMREEALQLAQNLESTLQSLQATGASDVSPVACIGLAPFNHGDSPQALLTLADQALAQAETLGDVSWVCLDH SAAASVGDDHHAWHSLLDQALIQQRFELYFQPVVASQDPQRVLHYKVLSRLVDGQGHTIPAGRFLPWLERFGWSARLDRLMLELVLKQMASHKHALALNL SAATLADPQALSRVFDLLRQHASLGPRLTLEIGEEQVPEQAVLEQLTQRLRELNFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRDIDQESDKRLFI EAIQRAAHSIDLPLIAERVETEGELKVIREMGIFGVQGQLFGEPAPWR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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