Pseudomonas fluorescens UK4, HZ99_RS17515
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain UK4, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCTGCTCAAGGTCACCACACCCATCACCGCGCAAGACACCGGCGGCAGCCTGCATGACCGGCTGGCCGAGATGGGCCCGCCAGCGGTGGTCGCGGCAA TTGCCGGCCTCGCCGCCGGTACCCTGCAAGGCGAAATACAGGACGACAGCCTCGCCACCTACGCCCACAAGCTGAACAAGGACGAAGCGCGCATCGACTG GAGCCGCCCGGCCGTGGAGCTGGAGCGCCTGGTACGCGCCTTCAACCCGTGGCCGATCTGCCACAGCACCCTCAATGGCGAAGCCTTGAAAGTCCTCGCC GCCACCCTGGCCGAAGGCAGCGGCGCGCCCGGTGAAATCATCGGCGCCAGCAGGGAAGGCCTGCTGGTGGCCTGCGGTGAACAGGCACTGTGTCTGACCC GTTTGCAATTGCCCGGCGGCAAGGCGCTGAACTTCAGCGATTTGTTCAACAGCCGCCGTGAGAAATTTTCCCCCGGTATCATTCTTGGAGTGGACGCTTG
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| DNA Sequence for Gene |
>HZ99_RS17515
ATGAACCCGCGTTTGGCCGCTGCCAAGGCCCTGGCCGCCGTGCTAACTGGCAAGGCTTCCCTGAACAGTTCGTTGCCAGTGCAACTGGATAAAGTCGAAG ACCGTGATCGCGGCTTCACCCAGGACCTGGCCTTTGGCACCGCCCGCTGGCAGCCGCGCCTGTCGGCGCTGGCAGCCAAGCTGCTGCAAAAGCCGTTCAA GGCTGCCGATGCCGATGTCGAGGCGCTGTTGCTGGTGGGGCTCTACCAGTTGCTCTACAGCCGGGTGCCCGCCCACGCCGCCATCGGTGAAACCGTGGGC TGCGCCGACAAGCTGAAAAAGCCCTGGGCCAAAGCCTTGCTCAACGCCGTGTTGCGCCGCGCCCAGCGCGAAAGCGAGGGGTTGCTGGCCGAGCTCGAAC ACGACCCGGTAGTGCGCACCGCACACCCACGCTGGCTGCAAAAATCCCTCAAGGCGTTCTGGCCCAAGCAGTGGGAAGCCATCTGTGCCGCCAACAACGC GCACCCGCCGATGATTTTGCGGGTCAATCGCCGCCATCACCACCGTAATGCCTATCTCACGTTACTGGCCGATGCCAGCATCAATGCTAGCGCCTGTGTG TACAGCCAGGACGGAATCGTGCTGGAGACCGCCTGCGATGTACGCAGCCTGCCGGGCTTTGCCGAAGGCTGGATCAGCGTGCAGGACGAAGCGGCGCAAC TGGCCGCCGGCCTGCTCGACCTGGCACCGGGCCAGCGGGTGCTGGACGCCTGCTGCGCCCCAGGCGGCAAGACCTGCCACATCATGGAAGTCGAGCCCGG CCTGGCCGGAGTCGTCGCCGTCGACCTGGAAGCCAAGCGCCTGGTACGGGTGCGCGAAAACCTTGCACGCCTGGGCCTGGACGCCGAGCTGATTGCCGCC GATGGTCGCGATACCGCCACCTGGTGGGATGGCAAGCCGTTCCAGCGCATCCTGCTGGACGCGCCCTGTTCCGCCACCGGCGTGATCCGCCGTCACCCGG ATATCAAGCTGACCCGCCAACCCGATGACATCGCCTCCCTGGCCGCGTTGCAAGGCGAGCTGCTGGACGCACTGTGGCCGACGCTGGAAGTCGGTGGCAT CCTGCTCTACGCCACCTGCTCGACCCTGCCGACCGAAAACACCGAGGTCATCGAAGCCTTCCTCGCGCGCACCAGCGGCGCGCGGGAGTTGGACATGGCT ACCACGGCGGGCCTCAAGCAGCCCCATGGCCGCCAGCTGTTGGCGCAGGAAGGCGGACACGATGGTTTTTACTACGCCAAACTGATCAAGATTGCCGCTG CACGCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGGTTTTTAAGGGAGTGACCGGATGAAGATCATCATCCTCGGCGCAGGGCAGGTCGGCGGTACGCTGGCCGAGCATTTGGCCAGTGAAGCCAACGACAT TACCGTGGTCGACACCGACGCCGAACGCCTGCGCGGCCTGGGCGACCGCCTGGATATCCGCACAGTCCAGGGCCGCGCCTCGTTCCCCACCGTGCTGCGC CAGGCCGGGGCCGACGATGCCGACATGCTGGTGGCAGTGACCAACAGTGACGAGACCAACATGGTTGCCTGCCAGGTCGCCCACACCCTGTTCCACACCC CGACCAAGATCGCCCGGGTGCGTGAAGCGGCCTACCTGACCCGCGCCGGCCTGTTCGACAACGACGCGATCCCCGTGGACGTGCTGATCAGCCCCGAGCA GGTGGTGACCCACTACATCAAGCGCCTGATCGAAATCCCCGGTGCGTTGCAGGTGATCGACTTTGCCGAAGGCAAGGCGCAACTGGTGGCGGTCAAGGCC
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| Amino Acid Sequence |
>16S rRNA methyltransferase
MNPRLAAAKALAAVLTGKASLNSSLPVQLDKVEDRDRGFTQDLAFGTARWQPRLSALAAKLLQKPFKAADADVEALLLVGLYQLLYSRVPAHAAIGETVG CADKLKKPWAKALLNAVLRRAQRESEGLLAELEHDPVVRTAHPRWLQKSLKAFWPKQWEAICAANNAHPPMILRVNRRHHHRNAYLTLLADASINASACV YSQDGIVLETACDVRSLPGFAEGWISVQDEAAQLAAGLLDLAPGQRVLDACCAPGGKTCHIMEVEPGLAGVVAVDLEAKRLVRVRENLARLGLDAELIAA DGRDTATWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQPDDIASLAALQGELLDALWPTLEVGGILLYATCSTLPTENTEVIEAFLARTSGARELDMA TTAGLKQPHGRQLLAQEGGHDGFYYAKLIKIAAARG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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