Pseudomonas fluorescens UK4, HZ99_RS15370
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain UK4, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGGGGCCCTGGGTTTCACCCTGGCCTGTGGCAGCGGCCAGGTCTTGGCCGAGCTGATCGGCCAGCACAGAACTTCCATTGACATGCAGGGCCTCGCGCC CCGCGCTGCATAGGGCTGCGCAATGACCATCACCCGGATCAACAGCAATAATCGCCTGTCGGGCGCCGTGGCTTTCCAGGACCTGGTGTTTCTCTCCGGC CAGGTGCCGGGCGAGGGCCTGGATGTCGCCACCCAGACCAAGGAAGTGCTGGCCAAGATTGATACGCTGCTGGCCGAGGCCGGCAGCGACAAGGATCATC TGCTCAACGCGACCATTTACCTGAAGAACATCCAGGAGGGCTTTGCGCCGATGAATGATGCCTGGTCTGCCTGGCTTACGCCCGGCCAGGCACCGACCCG CACCACCCTGCAGGCGGAGCTGGCACGCCCGAGTGTGCTGGTGGAAATCAGCGTCATCGCTGTCCGCCGTCCATAACAAGAAAACCAACGGAGAATAACA
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| DNA Sequence for Gene |
>HZ99_RS15370
ATGCAAAAAATCACGTTGATCGGCACTGCACTGGGGCTGTTGTTGACGGCCCAGGCCCAGGCCAATGAAGCGCTGCTGACGGGCACCCTGGCCAAGGTCG CGAATGCCAAGAGCATTACTCTGGGCTATCGCGATGCGTCGGTGCCGTTTTCCTATGTGGGTGACGCTACCGGCAAGCCCATGGGCTATTCGGTGGACCT GGCGAGCAAGATTGTCGAGCGCATCCAACAGAAGACCGGCGTGCCTGCGCTCAACGTGAAGTACAACCTGGTCACCTCGCAGACGCGCATCCCGTTGGTG ATCAACGGCACCGTGGACCTTGAGTGCGGCTCCACCGGGGTCACGGCCGAGCGGCAGAAGCAGGTGGCGTTCTCCTACGGTTTTATCTACGTGAAGGGCC AGTTGCTCACGGCCAAAGACAGCGGCATCCAACGCTTCGCTGACCTGCGGGGCAAGAACGTGGTGACCACCGCCGGCACCACCAACGAGCGGTTCCTCAA GAGCTACAACCATGAACACAAGCTCAAGATGTCGGTGATCAGCGCCAAGGACCATGGCGAAGCGTTCCAGATGCTGCAATCGGGCCGGGCCGTGGCGTTC TATATGGATGACGCCTTGCTTTACGGCGAGCGCGCCAAGGCCAAGGACCCGCACAAGTGGGTGGTGGTGGGCGAGGAGCAGTCGCGGGAAATCTACAGCT GCATGGTGCGCAAGGACGACCCGCAGTTCCTGGCGGTGGTCAACGAGACCCTGGGCGAGCTGTACCGCTCGGGGGAAATCAATGGGATCTACCAGCGCTG GTTTGAGCAGCCGATCCCGCCGAAGGGCTTGAACCTGGAATTCCCCATGACCAGCGAGCTGAAGGCGATTATTGCCAAGCCGGTCAGCGATCCGGTGGAA TAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACAGGCGAGCACCCGATCAAAACGGTAGGCGCTGGCTTGCCTGCGATGAGGCCCGCAAGTCTTGCGCAGGCCTTGATGCCGCCATCGCAGGCAAGCCAGC GCCTACCGTTTGATTGGGTTTGCAAAGTGGGCTTAGAAGTCGCCCCAGAGTTGTTGAGCGACGGATAGCGCGACGACGGGCGCCGTCTCGGTGCGCAGCA CTCGCGGGCCGAGCCGTGCGGCGTGGAAGCCGGCGCCTTGTGCGGTCTGGACTTCGCCATCGGTCAAGCCACCCTCCGGCCCGATCAAAAACGCCAGGCT CGACGGCTTGGCGTGGCTCACCAGCGGTGCCGCCACCGGGTGCAGCACCAACTTCAAATCTGCCTCGACCTGTTTCAACCAATCAGCCAGCAACTGTGGT GGGTGAATCACCGGCACCGTAGAGCGCCCGCATTGCTCACAGGCGCTGATGGCGACCTGGCGCCAGTGCAGCAGGCGTTTGTCGGCACGTTCGTCCTTGA
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| Amino Acid Sequence |
>ABC transporter
MQKITLIGTALGLLLTAQAQANEALLTGTLAKVANAKSITLGYRDASVPFSYVGDATGKPMGYSVDLASKIVERIQQKTGVPALNVKYNLVTSQTRIPLV INGTVDLECGSTGVTAERQKQVAFSYGFIYVKGQLLTAKDSGIQRFADLRGKNVVTTAGTTNERFLKSYNHEHKLKMSVISAKDHGEAFQMLQSGRAVAF YMDDALLYGERAKAKDPHKWVVVGEEQSREIYSCMVRKDDPQFLAVVNETLGELYRSGEINGIYQRWFEQPIPPKGLNLEFPMTSELKAIIAKPVSDPVE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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