Pseudomonas fluorescens UK4, HZ99_RS13240
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain UK4, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCGAGCAGTGGACGCCGCCGCCCCAGCAGCACGCCGCGCCAGTCGTGGCCGTGCCACAGGCTGCGCCGGGCAGTGCAGCGGGCGGGCAGTACCTGCAAGT CGGCGCTTTCGCCAACCCGGATGCGGCCGAACTGTTAAGGTCCAAGCTCAGCGGGATGGTCAGCGCGCCAGTGTTTATCAGTTCCATCGTGCGTAACCAG CAGACCCTGCATCGGGTACGCCTGGGCCCCATCGGCTCGGCGGGCGAGATTGCCCAGGTGCAGAACAGCGTGCGACTGGCCAACCTGGGTCAGCCCAGCC TGGTCAGCGCCGAATAAGCAGTAGCGGATCTAGGGTGCTGGCGCGCTTGCGTGCCGGAGCCCTGGTTGCAGGCTCGTCGAATAATAAAAACCCGAAGGCA AGGGTTGAGCGGGCAACTGAATACGCGACAGCCTGGCAACGGGCTGTCTGAATAGTTTTGCCCGCGAGGGCAAGTTTCCATAAGCAATTTCGAGAGACGG
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| DNA Sequence for Gene |
>HZ99_RS13240
ATGAACATCACCACCTTAGCCAAACGCCTGTGCCTGCTTGTCCCGCTGATCATCGCGCCTGCTGCCTGGGCCGTCGAAATGATGCCAGCGCCACCGCAAC TGGCTGCCAAGTCCTACGTGCTCATGGATGCCGCCAGCGGCAACGTGCTGGTCGAAAACAACGGTGACCAGCGCCTTCCGCCGGCCAGCCTGACCAAGCT GATGACCGCCTACATCGCGACCCTGGAAATCCGTCGCGGCCAGATCGGTGAAAACGATCCGGTGACCGTCAGCGAAAACGCCTGGCGTACCGGCGGCTCG CGGATGTTCATCAAAGTCGGCTCCCAGGTGACTGTCAGCGACCTGCTGCACGGCATCATCATCCAGTCCGGCAACGACGCCAGCGTCGCCCTGGCCGAGC ACATTGCCGGCAGCGAAGATGCGTTCGCCGACATGATGAACAAAACCGTGACTGACCTGGGTATGACCAACAGTCACTTCATGAACCCGACCGGCCTGCC GAACCCAGACCACTACTCGTCGGCCCATGACATGGCGATCCTGGCGCGCGCGATCATTCGCGTCGATCCGGTGCACTACGCCATCTACTCCCAGAAAGAA TTCTTCTGGAACAACATCAAGCAGCCTAACCGCAACCTGTTGCTGTGGCGCGACAAGACCGTCGATGGCCTGAAAACCGGGCACACTGACGAAGCCGGCT ACTGCATGGTGTCCTCGGCTGTGCGTGATGGCCAGCGCCTGATCGCCGTGGTGTTCGGCACCAATAGCGAACAGGCCCGTGCTGCCGAAACCCAGAAGCT GCTGACCTACGGTTTCCGCTTCTTCGAAACCCAGACCTTCTACCAGAAGGGCGCTGAGCTGGCCCAGGCTCCGGTCTGGAAAGGCACCGAGCGTCAAGTC AAGGCCGGCCTGGCGGATGACCTGACCCTGACCATGCCTAAAGGCCAGTTGAAGAAACTGGCTGCCAGCATGACCATGAACCCACAACTGACCGCGCCAA TCGCCAAGGGCGATGTGATCGGTAAAGTCGAAGTGAAGCTGGACGACAAAGTCGTACACAGCGCCGATCTGATCGCCCTCGACGCTGTTGAGGAAGGTGG TATCTTCCGCCGCGTGTGGGATAGCATCCGTCTATTCTTCTACGGCTTGTTCAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGTGTGCACCCGCAAAGCCCCGCGTTGATCCGACGCGGGGCTTTGCCCGTCGCCACGGCTTACCGCTTACGAGGCCGTTACGCCATGACCGATAAAGAA GTAAAGGCGCCAAAGATCGAATTCCCGGTGGTGGACTATCCCATCAAGGTGATCAGCGATACCGGTGTCGGCCGTAAAGACCTGATCCTTGAAATCGTGC GCAAGCACGCAACGATCAACGATCAGCGCGTGGATGAGCGATCCAGTTCTACCGGCAAATACACCACGATCCAGTTGCACATCGTTGCGACTGATCAAGA CCAGCTCTACAACATCAACAGCGAACTGCGAGCCACCGGTTTCGTACATATGGTGTTGTGATGTCACAGGTCCTGGGCTTTCGCGAGCTCGGCCAGATGG CTTACGAGCCTGTCTGGCATGCCATGCAGCGCTTCACCAATGAACGCGGCAGCTCGGCGCCCGACGAAATCTGGCTGGTGGAGCACCCGCCGGTATTCAC
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| Amino Acid Sequence |
>D-alanyl-D-alanine carboxypeptidase
MNITTLAKRLCLLVPLIIAPAAWAVEMMPAPPQLAAKSYVLMDAASGNVLVENNGDQRLPPASLTKLMTAYIATLEIRRGQIGENDPVTVSENAWRTGGS RMFIKVGSQVTVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMNKTVTDLGMTNSHFMNPTGLPNPDHYSSAHDMAILARAIIRVDPVHYAIYSQKE FFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGQRLIAVVFGTNSEQARAAETQKLLTYGFRFFETQTFYQKGAELAQAPVWKGTERQV KAGLADDLTLTMPKGQLKKLAASMTMNPQLTAPIAKGDVIGKVEVKLDDKVVHSADLIALDAVEEGGIFRRVWDSIRLFFYGLFN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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